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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgttgacatttctgattcatggtttagcattgcagttcttgaaccatccactttcttactgactagtgtttctattatttgttttaattctttcagGAGCGATTTTGGTAGTGGGTCCATGCTTTTAG

Basic information

species Vitis vinifera
transcript Vv08s0007g01340.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349824491|gb|FQ413158.1|FQ413158
EST:     GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAG                         GAGCGATNTTGGTAGTGGGTCCATGCTTTTAG
genomic: GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAGgtctgttgac ... attctttcagGAGCGATTTTGGTAGTGGGTCCATGCTTTTAG
EST: gi|110372149|gb|EC936298.1|EC936298
EST:     GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAG                         GAGCGATTTTGGTAGTGGGTCCATGCTTTTAG
genomic: GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAGgtctgttgac ... attctttcagGAGCGATTTTGGTAGTGGGTCCATGCTTTTAG
EST: gi|110718881|gb|EE096218.1|EE096218
EST:     GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAN                         GAGCGATTTTGGTAGTGGGTCCATGCTTTTAG
genomic: GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAGgtctgttgac ... attctttcagGAGCGATTTTGGTAGTGGGTCCATGCTTTTAG
EST: gi|110723305|gb|EE100463.1|EE100463
EST:     GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCC-ACCAG                         GAGCGATTTTGATAGTGGGTCC-TGCTTTTA
genomic: GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAGgtctgttgac ... attctttcagGAGCGATTTTGGTAGTGGGTCCATGCTTTTA
EST: gi|110356854|gb|EC919981.1|EC919981
EST:     GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAG                         GAGCGATTTTGGTAGTGGGTCCATGCTTTTAG
genomic: GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAGgtctgttgac ... attctttcagGAGCGATTTTGGTAGTGGGTCCATGCTTTTAG
EST: gi|351023717|gb|FQ448268.1|FQ448268
EST:     GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAG                         GAGCGATTTTGGTAGTGGGTCCATGCTTTTAG
genomic: GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAGgtctgttgac ... attctttcagGAGCGATTTTGGTAGTGGGTCCATGCTTTTAG
EST: gi|110688830|gb|EE067830.1|EE067830
EST:     GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTAACAA                         GAGCGATTTTGGGAGGGGGTC-ATGCTTTTAG
genomic: GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAGgtctgttgac ... attctttcagGAGCGATTTTGGTAGTGGGTCCATGCTTTTAG
EST: gi|110718248|gb|EE094865.1|EE094865
EST:     GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAG                         GAGCGATTTTGGTAGTGGGTCCATGCTTTTAG
genomic: GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAGgtctgttgac ... attctttcagGAGCGATTTTGGTAGTGGGTCCATGCTTTTAG
EST: gi|110731453|gb|EE105880.1|EE105880
EST:     GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAG                         GAGCGATTTTGGTAGTGGGTCCATGCTTTTAG
genomic: GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAGgtctgttgac ... attctttcagGAGCGATTTTGGTAGTGGGTCCATGCTTTTAG
EST: gi|37187578|gb|CF606931.1|CF606931
EST:     GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAG                         GAGCGATTTTGGTAGTGGGTCCATGCTTTTAG
genomic: GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAGgtctgttgac ... attctttcagGAGCGATTTTGGTAGTGGGTCCATGCTTTTAG
EST: gi|351025561|gb|FQ437049.1|FQ437049
EST:     GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAG                         GAGCGATTTTGGTTA-TGGGTCCA
genomic: GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAGgtctgttgac ... attctttcagGAGCGATTTTGGT-AGTGGGTCCA
EST: gi|349830477|gb|FQ416775.1|FQ416775
EST:     GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAG                         GAGCGATTTTGGTAGTGGGTCCATGCTTTTAG
genomic: GGTGGCAGTGATCTTTTTCCGGGACCTGGCGCTGGAATGTACCCTACCAGgtctgttgac ... attctttcagGAGCGATTTTGGTAGTGGGTCCATGCTTTTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaccatccactttcttactgactagtgtttctattatttgttttaattctttcagGAGCGATTTTGGTAGTGGGTCCATGCTTTTAG
                                              ttctttc  CT-rich tract
                         tgtttctattatttgt  TA-rich tract