Sequence
atgc intronic sequence ATGC exonic sequence...tatatctgttactgtagacatggtggcaggttaacatgtttacaatttgttgattctacttagagaccagtgtatttattaaatttattgcttgatccagGCCAAGATTCTTTATAAAGCCACTCCTTTCTCAGAAGATGAGCGTGAAAATATAAAGTTGAAGATTCAGAGCAATGTGTATGGCTATCTTGGTATACTCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G06910.1 (Glycine max), 3'ss of exon 8
tatatctgttactgtagacatggtggcaggttaacatgtttacaatttgttgattctacttagagaccagtgtatttattaaattt--attgcttgatccagGCCAAGATTCTTTATAAAGCCACTCCTTTCTCAGAAGATGAGCGTGAAAATATAAAGTTGAAGATTCAGAGCAATGTGTATGGCTATCTTGGTATACTCC
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aatagttagctacattgtcttcttttt--gtcaacatgcatgttgttgctgaagaaagccaagaaatcaatgtatttatagaattgtaaatgcttatgtcagGCCAAGATTCTTTACAAAAGCACCCCCTTTTCAGAAGATGAACGTGAAAATATAAAGTTGACCATTCAGACCAATGTGTATGCTTATCTTGGCATACTCT
upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA16G25990.1 (Glycine max), 3'ss of exon 6
tatatctgttactgtagacatggtggcaggttaacatgtttacaatttgttgattcta-cttagagaccagtgtatttattaaattt--attgcttgatccagGCCAAGATTCTTTATAAAGCCACTCCTTTCTCAGAAGATGAGCGTGAAAATATAAAGTTGAAGATTCAGAGCAATGTGTATGGCTATCTTGGTATACTCC
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-atatgtgc-atcaaaattatcatctcttaattcca-acttgcatgttgttgctgaaagccaaaaaaccaacgtatttatagaattgtaaatgcttatgtcagGCCAAGATTCTTTACAAAAGCACCCCCTTTTCAGAAGATGAACGTGAAAATATAAAGTTGACCATTCAGACCAATGTCTATGCTTATCTTGGCATACTCC
upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G38890.1 (Glycine max), 3'ss of exon 6
tatatctgttactgtagacatggtggcaggttaacatgtttacaatttgttgattctacttagagaccagtgtatttattaaattt---attgcttgatccagGCCAAGATTCTTTATAAAGCCACTCCTTTCTCAGAAGATGAGCGTGAAAATATAAAGTTGAAGATTCAGAGCAATGTGTATGGCTATCTTGGTATACTCC
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-atattttgacaagctcccttctatatataaaaacaaagtcactgataga-gatgctggcaatag-tcaatgtagtcatagaattgcaaattatttgtggcagGCCAAGATTCTGTACAAAAGTGTCCCATTCTCAGAAGATGAGCATGAAAATATAAAGTTGATCATTCAGAGTAATGTTTATGCCTACCTTGGCATGCTGC
upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G06410.1 (Glycine max), 3'ss of exon 6
tatatctgttact-gtagacatggtggcaggttaacatgtttacaatttgttgattctacttagagaccagtgtatttattaaattt--attgcttgatccagGCCAAGATTCTTTATAAAGCCACTCCTTTCTCAGAAGATGAGCGTGAAAATATAAAGTTGAAGATTCAGAGCAATGTGTATGGCTATCTTGGTATACTCC
| | ||| | | | ||| | | | | | ||| || | | | || |||||| || |||| | | ||| |||||||||||||| || ||| || |||||||||||||||| ||||||||||||| ||| |||||||| ||||| |||| ||| ||||| || || |
-aaaattgtggcaagccccctcctctatgtaaagacaaagtcatcaataga-gatgctggt-aatggtcaatgtattcatagaattgcaaatatttgtggcagGCCAAGATTCTGTACAAAAGTGTCCCATTCTCAGAAGATGAGCATGAAAATATAAAGCTGACCATTCAGAGTAATGTTTATGCCTACCTTGGCATGCTGC
upper sequence: Vv07s0255g00100.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT2G23460.1 (Arabidopsis thaliana), 3'ss of exon 3
tatatctgttactgtagacatggtggcaggttaacatgtt-tacaatttgttgat-tctacttagagaccagtgtatttattaaatttattgcttgatccagGCCAAGATTCTTTATAAAGCCACTCCTTTCTCAGAAGATGAGCGTGAAAATATAAAGTTGAAGATTCAGAGCAATGTGTATGGCTATCTTGGTATACTCC
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-----------gtatgagtctctttgctg-----tatgttgtactgctcgttagcgtaagccttaaaatctacaca---actgaattactttctcg-tttagGCAAAGATCCTTTATAAGGACGTACCATTCTTGGAAGATGAGCGTGAAAACATAAAGGTGATTATCCAGACCAATGTGTATGGTTATCTCGGTATGCTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgttgattctacttagagaccagtgtatttattaaatttattgcttgatccagGCCAAGATTCTTTATAAAGCCACTCCTTTCTCAGAAGATGAGCGTGAAAATATAAAGTTGAAGATTCAGAGCAATGTGTATGGCTATCTTGGTATACTCC
tatttattaaatttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatatctgttactgtagacatggtggcaggttaacatgtttacaatttgttgattctacttagagaccagtgtatttattaaatttattgcttgatccagGCCAAGATTCTTTATAAAGCCACTCCTTTCTCAGAAGATGAGCGTGAAAATATAAAGTTGAAGATTCAGAGCAATGTGTATGGCTATCTTGGTATACTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - -ctgttac
- - - - - - - - gacatgg
- - - - - - - - - - - - ggcaggt
- - - - - - - - - - - - - - - - -acatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccagtgt