1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttggtgttctaatttcttttttgatgggaaatatgatatgtttactgacattatttactaaagatgtatgattggtcttatctgtgtgcctggcagGTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGACTTTGCAAAGGAAGCGGGCAAGAATTGCAGAGAAGAAAAAGAGAATTGC
species | Vitis vinifera |
transcript | Vv07s0191g00060.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTG GTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGAEST: gi|110416628|gb|EC982622.1|EC982622
genomic: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgttggtgttc ... tgcctggcagGTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
EST: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTG GTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGAEST: gi|110406936|gb|EC972523.1|EC972523
genomic: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgttggtgttc ... tgcctggcagGTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
EST: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTG GTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGAEST: gi|351027768|gb|FQ446935.1|FQ446935
genomic: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgttggtgttc ... tgcctggcagGTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
EST: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTG GTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGAEST: gi|30131295|gb|CB916634.1|CB916634
genomic: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgttggtgttc ... tgcctggcagGTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
EST: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTG GTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGAEST: gi|32269925|gb|CD719084.1|CD719084
genomic: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgttggtgttc ... tgcctggcagGTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
EST: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTG GTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGAEST: gi|110732898|gb|EE108585.1|EE108585
genomic: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgttggtgttc ... tgcctggcagGTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
EST: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTG GTAAGAAGTGCAGTANAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
genomic: TGTTCGGAAGTATGTGAACACTTATCGCCGAACTTTTACTACTAAATCTGgttggtgttc ... tgcctggcagGTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGA
ttactgacattatttactaaagatgtatgattggtcttatctgtgtgcctggcagGTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGACTTTGCAAAGGAAGCGGGCAAGAATTGCAGAGAAGAAAAAGAGAATTGC
tactaaa putative branch site (score: 1)
attatttactaaagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtgttctaatttcttttttgatgggaaatatgatatgtttactgacattatttactaaagatgtatgattggtcttatctgtgtgcctggcagGTAAGAAGTGCAGTAAAGCTCCCAAAATACAGAGGCTGGTGACTCCCTTGACTTTGCAAAGGAAGCGGGCAAGAATTGCAGAGAAGAAAAAGAGAATTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA