Sequence
atgc intronic sequence ATGC exonic sequence...aagaagttgcaagcagttcctattattttcacaacattggtcacaattttttgacatatctgactttatgtttgatgttgctgtggtggttgttctgtagATCACACAGTACATGCAAGTTCCTCTATCATATGCAGATGCTGTAATTGGGGCATCTGGTGTAAATATAAGCTATGTACGCCGTACCAGTGGGGCAACTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0141g00800.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G130095_T02 (Zea mays), 3'ss of exon 3
aagaagttgcaagcagttc-ctattattttcacaac--attggtcacaattttttgacatatctgactttatgtttgatgttgctgtggtggtt--gttctgtagATCACACAGTACATGCAAGTTCCTCTATCATATGCAGATGCTGTAATTGGGGCATCTGGTGTAAATATAAGCTATGTACGCCGTACCAGTGGGGCAACTA
| ||| | || || || || | | | ||| | || | | ||| | || || | || |||| || | | || | ||||| ||||||||||||||| || ||||| |||||||| || |||||| |||||| | ||| ||||| | ||| | ||||| |||||||
gttagtttgtacacatttgactgctactaatatgatgaattatttgcatgcctatctcatgatcagttgtac-ttaacttttttcttggtaattttatacgacagGTGACACACAGCATGCAAGTTCCTCTTTCCTATGCTGATGCTGTGATAGGGGCAGCTGGTGCCAGTATCAGCTACATCCGCAGGCATAGTGGAGCAACTA
upper sequence: Vv07s0141g00800.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G34470.1 (Glycine max), 3'ss of exon 5
-------------------aagaagttgcaagcagttcctattattttcacaacattggtcacaattttttgacatatc-tgactttatgtttgatgttgctgtggtggttgttctgtagATCACACAGTACATGCAAGTTCCTCTATCATATGCAGATGCTGTAATTGGGGCATCTGGTGTAAATATAAGCTATGTACGCCGTACCAGTGGGGCAACTA
|| ||| | ||| | | | | || ||| | ||||| |||| | || |||| | || || || | | ||||| |||||||| ||||||| ||||||| |||||||||||||||| || || ||||| || |||||| |||||| |||| ||| | ||||| |||| ||
gtgtcgtcttttgcccaacttgagaatgcttgtagtcatagagactcttattcactt--tcaaagccttttgttttatcacaagttcatgt---aattttctctg-----tactgtgtagGTCACACAGCACATGCAGATTCCTCTTACATATGCAGATGCTGTTATAGGAGCATCGGGCACAAATATCAGCTATATACGTCGTGCTAGTGGAGCAAGTA
upper sequence: Vv07s0141g00800.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G03910.1 (Glycine max), 3'ss of exon 5
-----------------aagaag--ttgcaagcagttcctattattttcacaacattggtcacaattttttgacatatctgactttatgtttgatgttgctgtggtggttgttctgtagATCACACAGTACATGCAAGTTCCTCTATCATATGCAGATGCTGTAATTGGGGCATCTGGTGTAAATATAAGCTATGTACGCCGTACCAGTGGGGCAACTA
|| || ||||| ||| | ||| ||| | |||| | |||||||| |||||| || | ||| || | || | | ||||| ||||||| |||||||| ||||| | || |||||||||||||| ||||| ||||| || | ||| || ||||| | || || | ||||| |||| ||
gtatccttttttccccaaatgagtattgcagacagcagc-attgcttttgaagcatttttttttattttttg-------tgacttaatat--gat-ttcttttg-----tactatgtagGTCACACAACACATGCAAATTCCTTTGTCCTATGCAGATGCTGTTATTGGAGCATCAGGGGCAAACATCAGCTACATCCGTCGAGCTAGTGGAGCAAGTA
upper sequence: Vv07s0141g00800.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G03910.2 (Glycine max), 3'ss of exon 5
-----------------aagaagt--tgcaagcagttcctattattttcacaacattggtcacaattttttgacatatctgactttatgtttgatgttgctgtggtggttgttctgtagATCACACAGTACATGCAAGTTCCTCTATCATATGCAGATGCTGTAATTGGGGCATCTGGTGTAAATATAAGCTATGTACGCCGTACCAGTGGGGCAACTA-------------------------------------
|| ||| |||| ||| | ||| ||| | |||| | |||||||| |||||| || | ||| || | || | | ||||| ||||||| |||||||| ||||| | || |||||||||||||| ||||| ||||| || | ||| || ||||| | || || | ||||| |||| ||
gtatccttttttccccaaatgagtattgcagacagcagc-attgcttttgaagcatttttttttattttttg-------tgacttaatat--gat-ttcttttg-----tactatgtaggtcacacaacacatgcaaattcctttgtcctatgcagATGCTGTTATTGGAGCATCAGGGGCAAACATCAGCTACATCCGTCGAGCTAGTGGAGCAAGTATTACAATTCAGGAGACCAGGGGTGTGCCAGGAGAGAT
upper sequence: Vv07s0141g00800.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G15850.1 (Glycine max), 3'ss of exon 4
aagaagttgcaagcagttcctattattttcaca-acattggtcacaattttttgacatatctgactttat----gtttgatgttgctgtggtggttgttctgtagATCACACAGTACATGCAAGTTCCTCTATCATATGCAGATGCTGTAATTGGGGCATCTGGTGTAAATATAAGCTATGTACGCCGTACCAGTGGGGCAACTA
| | | || | | | || ||| | |||| ||| | | ||||| || || | | | || | ||||| |||| ||| |||||||| ||||| | || |||||||||||||| ||||| ||||| || | ||| || ||||| | || || | ||||| |||| ||
---gtatccttttttgcccaaatgagtattgcagacagcagcgttggttttgaagcatttatttatttattgtgacttaatttgatttctattgt-actatgtagGTCACGCAGCACATGCAAATTCCTTTGTCCTATGCAGATGCTGTTATTGGAGCATCAGGGGCAAACATCAGCTACATCCGTCGAGCTAGTGGAGCAAGTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attttttgacatatctgactttatgtttgatgttgctgtggtggttgttctgtagATCACACAGTACATGCAAGTTCCTCTATCATATGCAGATGCTGTAATTGGGGCATCTGGTGTAAATATAAGCTATGTACGCCGTACCAGTGGGGCAACTA
ttgttct CT-rich tract
tttatgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagaagttgcaagcagttcctattattttcacaacattggtcacaattttttgacatatctgactttatgtttgatgttgctgtggtggttgttctgtagATCACACAGTACATGCAAGTTCCTCTATCATATGCAGATGCTGTAATTGGGGCATCTGGTGTAAATATAAGCTATGTACGCCGTACCAGTGGGGCAACTA
- - - - gcaagca
- - - - - - - - - - - - - - -cacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggtgg