1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagaatatttgattctctgagatttgttctgctccattcttgtgatttttgtaccttgtgctttttctcatacactcttattgctttctcagGTTGATGAATTCTCCCGTACATCAGTTCCTTCCATTTGGGCAGTTGGAGATGTAACAGATAGAATAAATTTGACTCCAGTTGCTTTGATGGAGGGAGGAG
species | Vitis vinifera |
transcript | Vv07s0141g00390.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TAGGATTGGAGACAGTAGGAGTAAAAATGACCAAGACTGGAGCAATAGAG GTTGACGAATTCTCCCGTACATCAGTTCCTTCCATTTGGGCAGTTGGAGATEST: gi|110723818|gb|EE099103.1|EE099103
genomic: TAGGATTGGAGACAGTAGGAGTAAAAATGACCAAGACTGGAGCAATAGAGgtaagaatat ... gctttctcagGTTGATGAATTCTCCCGTACATCAGTTCCTTCCATTTGGGCAGTTGGAGAT
EST: TAGGATTGGAGACAGTANGAGTAAAAATGACCAAGACTGGAGCAATAGAG GTTGATGAATTCTCCCGTACATCAGTTCCTTCCATTTGGGCAGTTGGAGATEST: gi|30300914|gb|CB977708.1|CB977708
genomic: TAGGATTGGAGACAGTAGGAGTAAAAATGACCAAGACTGGAGCAATAGAGgtaagaatat ... gctttctcagGTTGATGAATTCTCCCGTACATCAGTTCCTTCCATTTGGGCAGTTGGAGAT
EST: TAGGACTGGAGACAGTAGGAGTAAAAATGACCAAGACTGGAGCAATAGAG GTTGATGAATTCTCCCGTACATCAGTTCCTTCCATTTGGGCAGTTGGAGAT
genomic: TAGGATTGGAGACAGTAGGAGTAAAAATGACCAAGACTGGAGCAATAGAGgtaagaatat ... gctttctcagGTTGATGAATTCTCCCGTACATCAGTTCCTTCCATTTGGGCAGTTGGAGAT
tcttgtgatttttgtaccttgtgctttttctcatacactcttattgctttctcagGTTGATGAATTCTCCCGTACATCAGTTCCTTCCATTTGGGCAGTTGGAGATGTAACAGATAGAATAAATTTGACTCCAGTTGCTTTGATGGAGGGAGGAG
ctcttattgctttctc CT-rich tract
atttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaatatttgattctctgagatttgttctgctccattcttgtgatttttgtaccttgtgctttttctcatacactcttattgctttctcagGTTGATGAATTCTCCCGTACATCAGTTCCTTCCATTTGGGCAGTTGGAGATGTAACAGATAGAATAAATTTGACTCCAGTTGCTTTGATGGAGGGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG