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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaggggaatgcgatttgatttttttttttcccctttttgttaatcaaacatatgatgttgtcaagtatttcctggatgaatatatcttgatttatttttattttcatattaactaaagcaattcatcgctgttgtttgtagGAAGCACAAATACGCAATGAGAAATATGTTCTGGAAAAACGCATTGCTTATATGCGTTTG

Basic information

species Vitis vinifera
transcript Vv07s0130g00420.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0130g00420.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os05g01060.2 (Oryza sativa), 3'ss of exon 5
gtaagaaaggggaatgcgatttgatttttttttttcccctttttgttaatcaaacatatgatgttgtcaagtatttcctggatgaatatatcttgatttatttttattttcatattaactaaagcaattcatcgctgttgtttgtagGAAGCACAAATACGCAATGAGAAATATGTTCTGGAAAAACGCATTGCTTATATGCGTTTG
                                                              || |  | | |      |  | | || ||  |  ||| |  |  ||| |    ||  | |  ||  | ||   | |||   ||||||||||||||||| ||| |||||| ||||| |||||||||||||||| || |||||  ||
--------------------------------------------------------------gtggctatgcacaataagactcactacattcttttttctactcctttcccaggtatttga--cagcttatgtttcttg---gtagGAAGCACAAATACTCAACGAGAAACATGTTTTGGAAAAACGCATTGCATACATGCGAATG

upper sequence: Vv07s0130g00420.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G104377_T03 (Zea mays), 3'ss of exon 4
gtaagaaaggggaatgcgatttgatttttttttttcccctttttgttaatcaaacatatgatgttgtcaagtatttcctggatgaatatatcttgatttatttttattttcatattaactaaagcaattcatcgctgttgtttgtagGAAGCACAAATACGCAATGAGAAATATGTTCTGGAAAAACGCATTGCTTATATGCGTTTG
                                                                     | ||    ||       | | || ||   | || ||  ||  || |  | |    ||  || |   | || ||   |||| || |||||||  ||||||||| |||| ||||||||||||||||| ||||||||  ||
------------------------------------------------------------------gtgactacacactaacaatctttttcctgtaatgttctttcttcaatctgtagtgtttca-ctcgtgtgtatt-ttaacagGAGGCCCAAATACTTAATGAGAAACATGTCCTGGAAAAACGCATTGCATATATGCGCATG

upper sequence: Vv07s0130g00420.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G31880.1 (Glycine max), 3'ss of exon 6
gtaagaaaggggaatgcgatttgatttttttttttcccctttttgttaatcaaacatatgatgttgtcaagtattt--cctggatgaatatatctt--gatttatttttattttcatattaactaaagcaattcatcgctgttgtttgt-agGAAGCACAAATACGCAATGAGAAATATGTTCTGGAAAAACGCATTGCTTATATGCGTTTG
                                                 | |||  | | |  | ||   |  ||   |   |||  ||| |||||  || |   ||||   |  || |  | |   |  | | ||   | ||   | | ||||||||||||||||||| || ||||||||  ||||||| |||||||| ||||||||| ||
------------------------------------------------gtaaaaggtgtaaaatagttttgctttaagctgtgatccatagatctttagagtatattttgcctcaatgtccattttggtgactgataattttttcatatcagGAAGCACAAATACGCAACGAAAAATATGTCTTGGAAAAGCGCATTGCATATATGCGTCTG

upper sequence: Vv07s0130g00420.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G23490.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaagaaaggggaatgcgatttgatttttttttttcccctttttgttaatcaaacatatgatgttgtca--agtatttcctggatgaatatatcttg-atttatttttattttcatattaactaaagcaatt--catcgctgttgt-ttgtagGAAGCACAAATACGCAATGAGAAATATGTTCTGGAAAAACGCATTGCTTATATGCGTTTG
                                                     | | |  |||| ||||  | |  || |||   |   ||  |||| |||  || ||| ||| ||  ||| | |    | |  |||    ||| | || |||||||| ||||| |||||||| |||||||||||||||||  | ||||| || |||||| ||
-----------------------------------------------------ataaactatgtagtcattaatgctttctgttggttcatcccttgcattctttgttaattttatgctaaatcagatgactaacattttagttatcttatagGAAGCCCAAATTCGCAATGAAAAATATGTTCTGGAAAAGAGAATTGCCTACATGCGTCTG

upper sequence: Vv07s0130g00420.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G08440.2 (Arabidopsis thaliana), 3'ss of exon 5
gtaagaaaggggaatgcgatttgatttttttttttcccctttttgttaatcaaacatatgatgttgtcaagtatttcctggatgaatatatcttgatttatttttattttcatattaactaaagcaattcatcgctgttgtttgtagGAAGCACAAATACGCAATGAGAAATATGTTCTGGAAAAACGCATTGCTTATATGCGTTTG
                                            || ||||     | |  |  | || ||| |||  || ||        |||| || ||||  | |   | |||  || ||  |  |  | ||   | ||| |||||||  |||||||||||||| ||||||||| ||||||| || |||||  | ||||||| |
--------------------------------------------gtaaatcgctagttt--taatctctagtgttttatgcata-------cttggttgatttacact---acattgtctgaataaccttttggcctgtttttttagGAAGTCCAAATACGCAATGAAAAATATGTTTTGGAAAAGCGTATTGCGCACATGCGTTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatttatttttattttcatattaactaaagcaattcatcgctgttgtttgtagGAAGCACAAATACGCAATGAGAAATATGTTCTGGAAAAACGCATTGCTTATATGCGTTTG
     ttatttttattttcat  TA-rich tract