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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctcattcctgtggagtaacaatagtttgaagcttttagtattttcatttttaccatgaaagcttttagttaggagaaattaaatctggctatcaattttgtcctccacttgttttcatctctcagattatttcatgtaaatgtcatggggttacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGATGAGGCACTAACTGGGCTGTTGCAAAATTTGTCACTGGAAGGATTTGGT

Basic information

species Vitis vinifera
transcript Vv07s0130g00310.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712155|gb|FC061527.1|FC061527
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAAGAGATAGAGA
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
EST: gi|351021979|gb|FQ437766.1|FQ437766
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
EST: gi|351049571|gb|FQ429193.1|FQ429193
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
EST: gi|349826636|gb|FQ418727.1|FQ418727
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
EST: gi|349817579|gb|FQ407369.1|FQ407369
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
EST: gi|351018506|gb|FQ424613.1|FQ424613
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
EST: gi|351019477|gb|FQ429612.1|FQ429612
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
EST: gi|349816072|gb|FQ399303.1|FQ399303
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACCTTGGAACCTGGAGCCAAAC-AAAACTTGGATCATGAGATAGAG
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGAC-TTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAG
EST: gi|351041001|gb|FQ443777.1|FQ443777
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAAGAGATAGAGA
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
EST: gi|349816179|gb|FQ403675.1|FQ403675
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
EST: gi|349815328|gb|FQ400483.1|FQ400483
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
EST: gi|351034264|gb|FQ448061.1|FQ448061
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
EST: gi|161717594|gb|FC066898.1|FC066898
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAG
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAG
EST: gi|30129333|gb|CB914672.1|CB914672
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
EST: gi|349827064|gb|FQ421337.1|FQ421337
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
EST: gi|349829875|gb|FQ422188.1|FQ422188
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
EST: gi|349829450|gb|FQ419982.1|FQ419982
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
EST: gi|110729851|gb|EE106263.1|EE106263
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
EST: gi|349807552|gb|FQ401917.1|FQ401917
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
EST: gi|351017764|gb|FQ436117.1|FQ436117
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
EST: gi|349809458|gb|FQ411956.1|FQ411956
EST:     GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGA                         GTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA
genomic: GTGGTACCAGACCCTGATGTCCCCAGTGGTTGTGACATAAATTCACCAGAgtatgtctca ... tacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttgttttcatctctcagattatttcatgtaaatgtcatggggttacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGATGAGGCACTAACTGGGCTGTTGCAAAATTTGTCACTGGAAGGATTTGGT
                   attatttcatgtaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtctcattcctgtggagtaacaatagtttgaagcttttagtattttcatttttaccatgaaagcttttagttaggagaaattaaatctggctatcaattttgtcctccacttgttttcatctctcagattatttcatgtaaatgtcatggggttacatttcagGTTTGACTTGGAACCTGGAGCCAAACCAAAACTTGGATCAGGAGATAGAGATGAGGCACTAACTGGGCTGTTGCAAAATTTGTCACTGGAAGGATTTGGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG