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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaatggaactttttaaaccttatatgctatataagcatcttttctcccattacattaccaaccttctctaagagaaggtcttgaatatcactttggaatattgtctttcagGTCAAACTTAATGAACTTGTAAAGCCCCATAAAGCGGTTGTAGATTATAGAACTGAGATTACTGGAGTCAGTGCAAAAGATTTTGATGAAACTACTTCCT

Basic information

species Vitis vinifera
transcript Vv07s0129g01120.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110412729|gb|EC978488.1|EC978488
EST:     ATGGAACTGAAGGTTTAGTGAGGGTATGTGTTGTGGATCGCAATTTACAG                         GTCAAACTTAATGAACTTGTAAAGCCCCATAAAGCGGTTGTAGATTATAGA
genomic: ATGGAACTGAAGGTTTAGTGAGGGTATGTGTTGTGGATCGCAATTTACAGgtactaatgg ... tgtctttcagGTCAAACTTAATGAACTTGTAAAGCCCCATAAAGCGGTTGTAGATTATAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accaaccttctctaagagaaggtcttgaatatcactttggaatattgtctttcagGTCAAACTTAATGAACTTGTAAAGCCCCATAAAGCGGTTGTAGATTATAGAACTGAGATTACTGGAGTCAGTGCAAAAGATTTTGATGAAACTACTTCCT
                                            ttgtctttc  CT-rich tract
                        ttgaatat  TA-rich tract