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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaagtagttttgagttacatcttcctgtttggctattttgaaagagtgttagtaatttccaccagcatgatttttcaaaactgcccttttctctgaaagtacatgctctgcagAATCCCAATGCACTTGACAGCAAGGCTCTCTTGGACTTTGATCATGTAAAAAATAGCTTGAAACTTGATGATGAAG

Basic information

species Vitis vinifera
transcript Vv07s0129g00040.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0129g00040.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G05130.1 (Glycine max), 3'ss of exon 5
gtattaagtagttttgagttacatcttcctgtttggctattttgaaagagtgttagtaatttccaccagcatgatttttcaaaactgcccttttctctgaaagtacatgctctgcagAATCCCAATGCACTTGACAGCAAGGCTCTCTTGGACTTTGATCATGTAAAAAATAGCTTGAAACTTGATGATGAAG
   | |  | | |||||   | | | |  | |  |    ||                |  || ||   || |  | | |   || ||   |  | | ||   ||  |   | |||||||||| ||||||||||||||||||| |||  |||| ||||||||||| |||||||| |||||| ||||||||||||
--gtaagttggatttgaacaagaacattttttccgttccttc---------------atctttcattggcttagtatctatcaagtgt--tggtgtttgtctgtgtactatgtgcagAATCCTAATGCACTTGACAGCAAGGTTCTTCTGGATTTTGATCATGTTAAAAATAGTTTGAAAGTTGATGATGAAG

upper sequence: Vv07s0129g00040.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA01G40170.1 (Glycine max), 3'ss of exon 5
gtattaagtagttttgagttacatcttcctgtttggctattttgaaagagtgttagtaatttccaccagcatgatttttcaaaactgcccttttctctgaaagtacatgctctgcagAATCCCAATGCACTTGACAGCAAGGCTCTCTTGGACTTTGATCATGTAAAAAATAGCTTGAAACTTGATGATGAAG
              | ||||  || | |         | ||||  |    |      |  || ||   || | || | |   || ||   |  | | ||   ||      | |||||||||| ||||||||||||||||||| |||  |||| ||||||||||| |||||||| |||||| ||||||||||||
-------------gtaagttggatttgcacaagaacattttttcca----ttccttcatctttcattggcttaatatctatcaagtgt--tggtgtttgtctgtgttctatgtgcagAATCCTAATGCACTTGACAGCAAGGTTCTTCTGGATTTTGATCATGTTAAAAATAGTTTGAAAGTTGATGATGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaccagcatgatttttcaaaactgcccttttctctgaaagtacatgctctgcagAATCCCAATGCACTTGACAGCAAGGCTCTCTTGGACTTTGATCATGTAAAAAATAGCTTGAAACTTGATGATGAAG
        atgatttttcaaaa  TA-rich tract