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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgctctatctctttggctctaattctatgcattttcgtatgatttatgttccccttgttttaattttttttaatgcttttttccatttcagGGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGTGGGCGTGGACGTGGGCGGGGCCGCTAACTGCATTCGTAAATTTTGTGCCATCTGGTTATGTAAAC

Basic information

species Vitis vinifera
transcript Vv07s0104g00160.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77578860|gb|DV218230.1|DV218230
EST:     CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAG                         GGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGCGGGCGTGGACGTGGGC
genomic: CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAGgtattgctct ... tccatttcagGGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGTGGGCGTGGACGTGGGC
EST: gi|110715316|gb|EE093229.1|EE093229
EST:     CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAG                         GGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGCGGGCGTGGACGTGGGC
genomic: CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAGgtattgctct ... tccatttcagGGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGTGGGCGTGGACGTGGGC
EST: gi|32246247|gb|CD712066.1|CD712066
EST:     CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAG                         GGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGCGGGCGTGGACGTGGGC
genomic: CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAGgtattgctct ... tccatttcagGGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGTGGGCGTGGACGTGGGC
EST: gi|71873275|gb|DT022330.1|DT022330
EST:     CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAG                         GGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGCGGGCGTGGACGTGGGC
genomic: CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAGgtattgctct ... tccatttcagGGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGTGGGCGTGGACGTGGGC
EST: gi|27583587|gb|CB006282.1|CB006282
EST:     CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAG                         GGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGCGGGCGTGGACGTGGGC
genomic: CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAGgtattgctct ... tccatttcagGGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGTGGGCGTGGACGTGGGC
EST: gi|110726188|gb|EE101761.1|EE101761
EST:     CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAG                         GGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGCGGGCGTGGACGTGGGC
genomic: CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAGgtattgctct ... tccatttcagGGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGTGGGCGTGGACGTGGGC
EST: gi|77578278|gb|DV217913.1|DV217913
EST:     CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAG                         GGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGCGGGCGTGGACGTGGGC
genomic: CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAGgtattgctct ... tccatttcagGGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGTGGGCGTGGACGTGGGC
EST: gi|110717228|gb|EE092911.1|EE092911
EST:     CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAG                         GGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGCGGGCGTGGACGTGGGC
genomic: CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAGgtattgctct ... tccatttcagGGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGTGGGCGTGGACGTGGGC
EST: gi|30131461|gb|CB916800.1|CB916800
EST:     CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAG                         GGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGCGGGCGTGGACGTGGGC
genomic: CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAGgtattgctct ... tccatttcagGGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGTGGGCGTGGACGTGGGC
EST: gi|110690320|gb|EE067314.1|EE067314
EST:     CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAG                         GGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGCGGGCGTGGACGTGGGC
genomic: CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAGgtattgctct ... tccatttcagGGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGTGGGCGTGGACGTGGGC
EST: gi|110419993|gb|EC986253.1|EC986253
EST:     CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAG                         GGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGCGGGCGTGGACGTGGGC
genomic: CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAGgtattgctct ... tccatttcagGGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGTGGGCGTGGACGTGGGC
EST: gi|71872888|gb|DT021943.1|DT021943
EST:     CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAG                         GGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGCGGGCGTGGACGTGGGC
genomic: CCTTTTGGTGGAAGAGACACCTAGGGTCAAGCCCAAGAAGCCAACCGCAGgtattgctct ... tccatttcagGGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGTGGGCGTGGACGTGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatgatttatgttccccttgttttaattttttttaatgcttttttccatttcagGGAGACCCATGGGACGTGGGCGGGGCCGTGGTCGTGGGCGTGGACGTGGGCGGGGCCGCTAACTGCATTCGTAAATTTTGTGCCATCTGGTTATGTAAAC
                               ttttaat  putative branch site (score: 3)
                           ttttttttaatgcttt  CT-rich tract
                  ttgttttaattttttt  TA-rich tract