Sequence
atgc intronic sequence ATGC exonic sequence...ctctagtacattattgaggttatagtttgaatgttatttcctaaaaatactttctttgtgaccctcaatatttaattgggatctttcttttgtcatgtagGTGGGGGCCTTGCAATCTTGAGGTCAGAATTGAAAAACCAAAAGAAGCAAGTACGAAATTTAAAGAAGAAGTCACTCTGGTCCAGGAGTTTAGAAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G00670.1 (Glycine max), 3'ss of exon 5
ctctagtacattattgaggttatagtttgaatgttatttcctaaaaatactttcttt--gtgaccctcaatatttaa----ttgggatctttcttttgtcatgtagGTGGGGGCCTTGCAATCTTGAGGTCAGAATTGAAAAACCAAAAGAAGCAAGTACGAAATTTAAAGAAGAAGTCACTCTGGTCCAGGAGTTTAGAAGAG
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----agt-cact-ctgacctagaagtttgactgtattataatgtacattatttctataggtaattcgttatgtataaaatgttgactctctctcttcatcatgtagGTGATGGCCTTTCAATCTTGAGGGCAGAACTTAAAAGTCAAAAGAAGCAAGTTAAACATTTGAAAAAAAAGTCACTCTGGTCCAGAAGTTTGGAGGAG
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA05G33040.1 (Glycine max), 3'ss of exon 5
ctctagtacattattgaggttatagttt-gaatgttatttcctaaaaatactttctttgtgaccctcaat--atttaattgggatctttcttttgtcatgtagGTGGGGGCCTTGCAATCTTGAGGTCAGAATTGAAAAACCAAAAGAAGCAAGTACGAAATTTAAAGAAGAAGTCACTCTGGTCCAGGAGTTTAGAAGAG
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--aaaagtcact-ctgacctagaagttttgactgttacattgtgcaatatttctataggtaatttgttatgcataaaatcttgactctctcttcatcatgtagGTGATGGCCTTTCAATCTTGAGGGCAGAACTTAAAAGTCAAAAAAAGCAAGTTAAACATTTGAAAAAAAAGTCACTCTGGTCCAGAAGTTTGGAGGAG
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA04G38370.1 (Glycine max), 3'ss of exon 5
ctctagtacatta--ttgaggttatagtttgaatgttatttcctaaaaatactttctttgtgaccctcaatatttaattgggatctt-tcttttgtcatgtagGTGGGGGCCTTGCAATCTTGAGGTCAGAATTGAAAAACCAAAAGAAGCAAGTACGAAATTTAAAGAAGAAGTCACTCTGGTCCAGGAGTTTAGAAGAG
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--tcagaagtttgaccttttgcagtatattgagcagtatttgcttatg-tagtctcttatagattataggtatacttttgaccttcagtatctcttcaaatagGTGATGGCCTTGCATTCTTGAGGGCAGAAATTAAAAGTCAAAAGAAGCAAATTAGGCATTTAAAGAAAAAATCACTCTGGTCTAGAAGTTTGGAGGAG
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA06G16680.1 (Glycine max), 3'ss of exon 4
----------ctctagtacatta--ttgaggttatagt---ttgaatgttatttcctaaaaatactttctttgtgaccctcaatat----ttaattgggatctttcttttgtcatgtagGTGGGGGCCTTGCAATCTTGAGGTCAGAATTGAAAAACCAAAAGAAGCAAGTACGAAATTTAAAGAAGAAGTCACTCTGGTCCAGGAGTTTAGAAGAG
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aaaaaagtcactttgattcagaagtttgaccttgcagcatatcgagcagtatttgtttatg-tagtctcttatagattatagatatacttttgaccttcagCATCTCTTCATCAAATAGGTGATGGCCTTGCATTCTTGAGGGCAGAAATTAAAAGTCAAAAGAAGCAAATTAGACAGTTAAAGAAAAAATCACTCTGGTC----------------
upper sequence: Vv07s0031g02970.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA06G16690.1 (Glycine max), 3'ss of exon 5
---ctctagtacattattgaggttatagtttgaatgttatttcctaaaaatactttctttgtg---accctcaatatttaattgggatctttcttttgtcatgtagGTGGGGGCCTTGCAATCTTGAGGTCAGAATTGAAAAACCAAAAGAAGCAAGTACGAAATTTAAAGAAGAAGTCACTCTGGTCCAGGAGTTTAGAAGAG
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aacagttgccaaagcatctactttg-ggttttgttagtatttgcttatgtagtctcctgtagatatacttttgacattcaat----atctct-tgtcatcatatagGTGATAGCCTTGCATTGTTGAGGGCAGAGATTAAAAGTCATATGAGGCAAATTAGACATTTAAAGAAGAAATCACTCTGGTGCAGAAGTTTAGAGGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718502|gb|FC069286.1|FC069286EST: AGATTATCAGCACAAGCGTCTGGAAGATGCTATTTCAATTGGTCCTAAAG GTGGGGGCCTTGCAATCTTGAGGTCAGAATTGAAAAACCAAAAGAAGCAAG
genomic: AGATTATCAGCACAAGCGTCTGGAAGATGCTATTTCAATTGGTCCTAAAGgtgatttcat ... tgtcatgtagGTGGGGGCCTTGCAATCTTGAGGTCAGAATTGAAAAACCAAAAGAAGCAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatactttctttgtgaccctcaatatttaattgggatctttcttttgtcatgtagGTGGGGGCCTTGCAATCTTGAGGTCAGAATTGAAAAACCAAAAGAAGCAAGTACGAAATTTAAAGAAGAAGTCACTCTGGTCCAGGAGTTTAGAAGAG
atttaat putative branch site (score: 4)
tctttcttttgtcat putative PPT
tcaatatttaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctctagtacattattgaggttatagtttgaatgttatttcctaaaaatactttctttgtgaccctcaatatttaattgggatctttcttttgtcatgtagGTGGGGGCCTTGCAATCTTGAGGTCAGAATTGAAAAACCAAAAGAAGCAAGTACGAAATTTAAAGAAGAAGTCACTCTGGTCCAGGAGTTTAGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctcaa