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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaatcatggttttgtggctaacttatttccaaaatttcttgcttttctatttttgggctctgtcttgtcactgtatatgtgagcttatgacatttaaatccttaagtaacacatgatttagcttgctgattctaattgagcttctccccttatgcagGTAATGAGTATAAAAGCTGTTGGCATTGCCATAGAACTCACTTTGGAGGGTACAAATCAGTTTAAGTACTTCCAAGCATGGGTCTTTTTAATGGTTTCAG

Basic information

species Vitis vinifera
transcript Vv07s0031g02960.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161718353|gb|FC065012.1|FC065012
EST:     CCAATATCTTGGTTTATATTGGCATATGCTCTATAATTGGATCATTGACA                         GTAATGAGTATAAA-GCTGTTGGCATTGC-ATAGA-CTCA
genomic: CCAATATCTTGGTTTATATTGGCATATGCTCTATAATTGGATCATTGACAgtaagtaatc ... ccttatgcagGTAATGAGTATAAAAGCTGTTGGCATTGCCATAGAACTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagtaacacatgatttagcttgctgattctaattgagcttctccccttatgcagGTAATGAGTATAAAAGCTGTTGGCATTGCCATAGAACTCACTTTGGAGGGTACAAATCAGTTTAAGTACTTCCAAGCATGGGTCTTTTTAATGGTTTCAG
                           ttctaat  putative branch site (score: 2)
                                      cttctccccttatgc  putative PPT
                          attctaatt  TA-rich tract