Sequence
atgc intronic sequence ATGC exonic sequence...tatgaagtgctctgtaaagaatgagtcatctaatttgttgacgtataaactactatggtacatggccatcttgattcttatctgtttgttcattatgcagCTTAATCAGCAGTGTGAAGATAGGACTGTTCTGCGATATGTCTATTATTACCTAGCCAGAATTTTGTCAGATACCAGTGCACAAGGTTTAAGTTCTGGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G03020.1 (Glycine max), 3'ss of exon 4
tatgaagtgctctgtaaagaatgagtcatctaatttgttgacgtataaact-actatggtaca--tggccatcttgattct-tatctgtttgttcattatgcagCTTAATCAGCAGTGTGAAGATAGGACTGTTCTGCGATATGTCTATTATTACCTAGCCAGAATTTTGTCAGATACCAGTGCACAAGGTTTAAGTTCTGGTG
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----aatagtgcaataatgtgtcatactgatatttctttatggaatgtgtttacccttgcttaatctgttgtcaaaatcttgtatctctgtctctgttctgtagCTTAATCAACAGTGTGAAGATAGAAGTGTTCTCCGATACGTCTATTACTACCTTGCCAGAATTTTGTCTGACACTGGTCCCCAAGGTTTGAGCACAGGTG
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA05G36530.1 (Glycine max), 3'ss of exon 4
---tatgaagtgctctgtaaagaatgagtcatctaatttgttgacgtataaactactatggtacatggccatcttgattct-tatctgtttgttcattatgcagCTTAATCAGCAGTGTGAAGATAGGACTGTTCTGCGATATGTCTATTATTACCTAGCCAGAATTTTGTCAGATACCAGTGCACAAGGTTTAAGTTCTGGTG
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aatagtacaataatttgtcat-actga--tatttcgttatggaatgtgtttacccttgcttaatctg-ttgtcaaaatcttgtatctctgtctctgttctgtagCTTAATCAGCAATGTGAAGATAGAAGTGTTCTCCGATACGTCTATTACTACCTTGCCAGAATTTTATCTGACACTGGTCCCCAAGGTTTGAGCACAGGTG
upper sequence: Vv07s0031g02090.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT2G07360.1 (Arabidopsis thaliana), 3'ss of exon 4
---tatgaagtgctctgtaaagaatgagtcatctaatttgttgacgtataaactactatggtacatggccatcttgattcttatctgtttgttcattatgcagCTTAATCAGCAGTGTGAAGATAGGACTGTTCTGCGATATGTCTATTATTACCTAGCCAGAATTTTGTCAGATACCAGTGCACAAGGTTTAAGTTCTGGTG---
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aattatcatggatcttcacaaattcgcattttcaaaaacaatatccgtcaaagaga---ggcatcaggtttttagcattctttttctcttgtgattgatacagCTTAATCAGCAATGTGAAGACAGGAATGTGCTACGATATGTTTATTATTACCTAGCTAGAATTTTGTCCGATAC--GGGCATGAC-TCCAGGGGGTGGTATCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taaactactatggtacatggccatcttgattcttatctgtttgttcattatgcagCTTAATCAGCAGTGTGAAGATAGGACTGTTCTGCGATATGTCTATTATTACCTAGCCAGAATTTTGTCAGATACCAGTGCACAAGGTTTAAGTTCTGGTG
tcttgat putative branch site (score: 4)
tttgttc putative PPT
attcttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatgaagtgctctgtaaagaatgagtcatctaatttgttgacgtataaactactatggtacatggccatcttgattcttatctgtttgttcattatgcagCTTAATCAGCAGTGTGAAGATAGGACTGTTCTGCGATATGTCTATTATTACCTAGCCAGAATTTTGTCAGATACCAGTGCACAAGGTTTAAGTTCTGGTG
- - - - - - - taaagaa
- - - - - - - - - - - - - - - - - -tgttgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccatct