Sequence
atgc intronic sequence ATGC exonic sequence...ctgttctatgcttgcttttatctgtaccctggctcattcttttttcctttttccattttttttggggttatttatgagattggttgatatattttatcagGATGGATGAAGCGAGGCAACCACTTTCAAGGAAGTTACCCATTCCTTCAAGCATAATAAGCCCTTACAGATTGATAATTATACTCCGACTCATAATTCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA08G15380.1 (Glycine max), 3'ss of exon 5
ctgttctatgcttgcttttatctgtaccctggctcattctt--ttttcctttttccattttttttggggttatttatgagattggttgatatattttatcagGATGGATGAAGCGAGGCAACCACTTTCAAGGAAGTTACCCATTCCTTCAAGCATAATAAGCCCTTACAGATTGATAATTATACTCCGACTCATAATTCTT
| | | | || | | | || | | | | ||||| | | | ||| | | |||| | | || | ||||||| || |||||||||||||| ||||| |||||||| ||||| |||| || |||||||||| |||| ||||||||| |||| || |||||||| || | | |||
-ggatgcaagtttaactagaatggaacaattacatttctctaattttctaccctatactgtttctttgagtattgac-atttttatcaatatattataacagGATGGATGAAGGCAGGCAGCCACTTTCTCGGAAGCTACCTATCCCTTCAAGCAAGATAAATCCTTACAGAATGATTATAATACTCCGCCTTGTTGTGCTT
upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA05G32100.1 (Glycine max), 3'ss of exon 5
ctgttctatgcttgcttttatctgtac---cctggctcattcttttttcctttttccattttttttggggttatttatgagattggttgatatattttatcagGATGGATGAAGCGAGGCAACCACTTTCAAGGAAGTTACCCATTCCTTCAAGCATAATAAGCCCTTACAGATTGATAATTATACTCCGACTCATAATTCTT
| | | | || | | | || | || | |||||| | |||| | || |||| | | || | ||||||| || |||||||||||||| || || |||||||| ||||| |||| || |||||||||| |||| ||||||||| |||| || ||||||| || | | |||
--gatgcaagtttaactagaatggaacaattatatttctctaatttttctaccggatacttttgctttgggtattgac-atttttatcaatatattataacagGATGGATGAAGGCAGACAGCCACTTTCTCGGAAGCTACCAATCCCTTCAAGCAAGATAAATCCTTACAGAATGATTATAGTACTCCGCCTTGTTGTCCTT
upper sequence: Vv07s0031g02060.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT4G39350.1 (Arabidopsis thaliana), 3'ss of exon 4
---------------ctgttctatgcttgcttttatctgtaccctggctcattcttttttcctttttccattttttttggggttatttatgagattggttgatatattttatcagGATGGATGAAGCGAGGCAACCACTTTCAAGGAAGTTACCCATTCCTTCAAGCATAATAAGCCCTTACAGATTGATAATTATACTCCGACTCATAATTCTT
|| | | | | | | | ||| ||| | | ||| | | |||| || ||| |||| | ||| | | || || |||||||||||||| || ||||| || ||||| ||| |||| |||| |||||||| ||||| |||||||| || ||||| | || ||| ||||||
gtaagttgttaaaatctaacaaaagttcagatgaaatgatgctctgaa--attttgtgttcaatggttttgttttcttattgttgttta-aacatttttcgtgctaatt---cagGATGGATGAAGGAAGACAACCTCTCTCAAGAAAGCTACCTATTCGTTCAAGCAGAATAAATCCTTACAGGATGTTAATTCTGTGTCGCCTCGCGATTCTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctttttccattttttttggggttatttatgagattggttgatatattttatcagGATGGATGAAGCGAGGCAACCACTTTCAAGGAAGTTACCCATTCCTTCAAGCATAATAAGCCCTTACAGATTGATAATTATACTCCGACTCATAATTCTT
ggttgat putative branch site (score: 5)
ttttatc putative PPT
ttgatatattttatca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctgttctatgcttgcttttatctgtaccctggctcattcttttttcctttttccattttttttggggttatttatgagattggttgatatattttatcagGATGGATGAAGCGAGGCAACCACTTTCAAGGAAGTTACCCATTCCTTCAAGCATAATAAGCCCTTACAGATTGATAATTATACTCCGACTCATAATTCTT
- - -ctatgct
- - - - - - - - - - - - - ccctggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttga