1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tatattcatttttctcatattcatgcatgtttttgcatcctgctcgtatcgtatcatttaggaatgctgctgatgatttgccccactttgttccctgcagATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAATTCATCTGTATTGGAAGATTCACTGCAGTGTCCTTCCAAGTGATTGGGC
species | Vitis vinifera |
transcript | Vv07s0031g01860.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTG ATGTTCATCATTCTGTCATGTACAATTGCGGTAGGAACCAACCTCAGCCAAEST: gi|34544353|gb|CF512585.1|CF512585
genomic: GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTGgtaagtattg ... ttccctgcagATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAA
EST: GGTTGACAAATAAAAGAGTTGACAACTACCAATACAGTTTAATATCTGTG ATGTTCATCATTEST: gi|34546885|gb|CF515117.1|CF515117
genomic: GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTGgtaagtattg ... ttccctgcagATGTTCATCATT
EST: GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTG ATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAAEST: gi|22010955|gb|BQ795989.1|BQ795989
genomic: GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTGgtaagtattg ... ttccctgcagATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAA
EST: GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTG ATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAAEST: gi|46918320|gb|CN547649.1|CN547649
genomic: GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTGgtaagtattg ... ttccctgcagATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAA
EST: GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTG ATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAAEST: gi|71886650|gb|DT035705.1|DT035705
genomic: GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTGgtaagtattg ... ttccctgcagATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAA
EST: GTTGGACAAATAACAGAGTTGACAACTACCAATACAGTTTAATATCTGTG ATGTTCATCATTCTGTCCTGEST: gi|22013082|gb|BQ798116.1|BQ798116
genomic: GTTG-ACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTGgtaagtattg ... ttccctgcagATGTTCATCATTCTGTCCTG
EST: GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTG ATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAA
genomic: GGTTGACAAATAAGAGAGTTGACAACTACCAATACAGTTTAATATCTGTGgtaagtattg ... ttccctgcagATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAA
gtatcgtatcatttaggaatgctgctgatgatttgccccactttgttccctgcagATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAATTCATCTGTATTGGAAGATTCACTGCAGTGTCCTTCCAAGTGATTGGGC
tgctgat putative branch site (score: 3)
ccccactttgttccct putative PPT
tatcattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatattcatttttctcatattcatgcatgtttttgcatcctgctcgtatcgtatcatttaggaatgctgctgatgatttgccccactttgttccctgcagATGTTCATCATTCTGTCCTGCACAATTGCGGTAGGAACCAACCTCAGCCAATTCATCTGTATTGGAAGATTCACTGCAGTGTCCTTCCAAGTGATTGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - tcatgca
- - - - - - - - - - - - - - - ttttgca
- - - - - - - - - - - - - - - - - - - cctgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgctg