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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcctagataatattctatttatttttgtagaaatctaaaatctctcttttcttcctttccatgctttggcattatgttttactgcaatgatgttacatcaccatgtctgataaaaaaaatttccatttttgcaattttgtctgcagGGATCTTTCAAACAATCGTCTAGCAGGACCTGTTCCAGACAATGGTTCATTTTCACTATTTACTCCCATAAG

Basic information

species Vitis vinifera
transcript Vv07s0031g01410.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161716121|gb|FC065843.1|FC065843
EST:     TCAGGTTCCATTCCCATGTTCTTGACTAATATCTCAGCACTGCAAGTCTT                         GGATCTTTCAAACAATCGTCTAGCAGGACCTGTTCCAGACAATGGTTCATT
genomic: TCAGGTTCCATTCCCATGTTCTTGACTAATATCTCAGCACTGCAAGTCTTgtgagtgcct ... ttgtctgcagGGATCTTTCAAACAATCGTCTAGCAGGACCTGTTCCAGACAATGGTTCATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttacatcaccatgtctgataaaaaaaatttccatttttgcaattttgtctgcagGGATCTTTCAAACAATCGTCTAGCAGGACCTGTTCCAGACAATGGTTCATTTTCACTATTTACTCCCATAAG
             gtctgat  putative branch site (score: 4)
                                           ttttgtct  putative PPT
                  ataaaaaaaatttcca  TA-rich tract