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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgattgtacttgtataacaatatcccattatctcataaactttgcaatttattagaattggacttagccccttagcctccatttcaatgcagGAAAAATCCTTCTGTAAGGGTGTAGCTTATGTCATTGCAATGGTTGCAGAATTTGATGAGTACACAAATGATTGGCTCTATCTCCGAGAAGGGACTGTCC

Basic information

species Vitis vinifera
transcript Vv07s0031g00790.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00790.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G20190.1 (Glycine max), 3'ss of exon 5
gtttgattgtacttgtataacaatatcccattatctcataaactttgcaatttattagaattggacttagccccttagcctccatttcaatgcagGAAAAATCCTTCTGTAAGGGTGTAGCTTATGTCATTGCAATGGTTGCAGAATTTGATGAGTACACAAATGATTGGCTCTATCTCCGAGAAGGGACTGTCC
    | ||| | ||  || ||  | |      |||   |||  ||  |    |  |   ||   |  |  ||  ||  ||| | | |   || |||||| ||| ||| |||  ||| |||| ||||| ||||| |||||||| || |||||||| || |||||||||||||||||||| || ||||| ||  || 
----gtttgaagtttgatcactttttttgtccatcat-taactttcactgaatcctttgatcttatctcaccttttgaccttcctgtgggtgtagGAAAGATCTTTCCGTAGAGGTATAGCCTATGTGATTGCTATGGTTGCTGAGTTTGATGAATATACAAATGATTGGCTCTATCTTCGCGAAGGAACATTCT

upper sequence: Vv07s0031g00790.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT4G37030.1 (Arabidopsis thaliana), 3'ss of exon 5
gtttgattgtacttgtataacaatatcccatt-atctcataaactttgcaatttattagaattggacttagccccttagcctccatttcaatgcagGAAAAATCCTTCTGTAAGGGTGTAGCTTATGTCATTGCAATGGTTGCAGAATTTGATGAGTACACAAATGATTGGCTCTATCTCCGAGAAGGGACTGTCC
              ||| | ||  |||  ||| | |  || |     | ||  |||  |  ||     |      | |  ||| | |    |||||||||  || ||| | |  || ||  ||||||| |||||| | |||| |||||||||||||||||||||||||||||| || ||  ||||||| ||  || 
--------------gtacaccatgatcatattgaccgaatgattcgagaaaaatatcgggtttcttactcattgttgaatctctaatc---tgcagGAAAGGTCATTCAGAAGAGGAGTCTCTTATGTGATTGCAGTAGTTGGAGAATTTGATGAGTACACAAATGATTGGCTTTACCTTAGAGAAGGAACCATCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactttgcaatttattagaattggacttagccccttagcctccatttcaatgcagGAAAAATCCTTCTGTAAGGGTGTAGCTTATGTCATTGCAATGGTTGCAGAATTTGATGAGTACACAAATGATTGGCTCTATCTCCGAGAAGGGACTGTCC
                                      cctccatttc  CT-rich tract
        aatttattagaatt  TA-rich tract