1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atatgtttagtcagctactgcacttttccagcagtaagttgtttcaattgccactcactctgtttatgaatcagaaatgtgaattgttaaattttagcagGTACCACCTTTTTCTACGCATTTTGCTGTTATTGGTGCTGGCATGGATAACTCTGCTTCTATCTAACTTGGTCTTGATTGTTGTACCAATTTCACTTGGA
species | Vitis vinifera |
transcript | Vv07s0031g00230.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAGAAAAGAATGGTGATGAACAAGCTGATTCTGA GTACCACCTTTTTCTACGCATTTTGCTGTTATTGGTGCTGGCATGGATAACEST: gi|110356919|gb|EC920092.1|EC920092
genomic: GAAGAAAAGAATGGTGATGAACAAGCTGATTCTGAgtaagtgttg ... attttagcagGTACCACCTTTTTCTACGCATTTTGCTGTTATTGGTGCTGGCATGGATAAC
EST: GAACAAGCTGATTCTGA GTACCACCTTTTTCTACGCATTTTGCTGTTATTGGTGCTGGCATGGATAACEST: gi|110725160|gb|EE101552.1|EE101552
genomic: GAACAAGCTGATTCTGAgtaagtgttg ... attttagcagGTACCACCTTTTTCTACGCATTTTGCTGTTATTGGTGCTGGCATGGATAAC
EST: GGGAACTCTGATGTTGAAGAAAAGAATGGTGATGAACAAGCTGATTCTGA GTACCACCTTTTTCTACGCATTTTGCTGTTATTGGTGCTGGCATGGATAACEST: gi|110357312|gb|EC920764.1|EC920764
genomic: GGGAACTCTGATGTTGAAGAAAAGAATGGTGATGAACAAGCTGATTCTGAgtaagtgttg ... attttagcagGTACCACCTTTTTCTACGCATTTTGCTGTTATTGGTGCTGGCATGGATAAC
EST: GAACAAGCTGATTCTGA GTACCACCTTTTTCTACGCATTTTGCTGTTATTGGTGCTGGCATGGATAACEST: gi|110729059|gb|EE105241.1|EE105241
genomic: GAACAAGCTGATTCTGAgtaagtgttg ... attttagcagGTACCACCTTTTTCTACGCATTTTGCTGTTATTGGTGCTGGCATGGATAAC
EST: GGGAACTCTGATGTTGAAGAAAAGAATGGTGATGAACAAGCTGATTCTGA GTACCACCTTTTTCTACGCATTTTGCTGTTATTGGTGCTGGCATGGATAACEST: gi|110719714|gb|EE095083.1|EE095083
genomic: GGGAACTCTGATGTTGAAGAAAAGAATGGTGATGAACAAGCTGATTCTGAgtaagtgttg ... attttagcagGTACCACCTTTTTCTACGCATTTTGCTGTTATTGGTGCTGGCATGGATAAC
EST: GGGAACTCTGATGTTGAAGAAAAGAATGGTGATGAACAAGCTGATTCTGA GTACCACCTTTTTCTACGCATTTTGCTGTTATTGGTGCTGGCATGGATAAC
genomic: GGGAACTCTGATGTTGAAGAAAAGAATGGTGATGAACAAGCTGATTCTGAgtaagtgttg ... attttagcagGTACCACCTTTTTCTACGCATTTTGCTGTTATTGGTGCTGGCATGGATAAC
aattgccactcactctgtttatgaatcagaaatgtgaattgttaaattttagcagGTACCACCTTTTTCTACGCATTTTGCTGTTATTGGTGCTGGCATGGATAACTCTGCTTCTATCTAACTTGGTCTTGATTGTTGTACCAATTTCACTTGGA
cactcac putative branch site (score: 2)
aaatgtgaattgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgtttagtcagctactgcacttttccagcagtaagttgtttcaattgccactcactctgtttatgaatcagaaatgtgaattgttaaattttagcagGTACCACCTTTTTCTACGCATTTTGCTGTTATTGGTGCTGGCATGGATAACTCTGCTTCTATCTAACTTGGTCTTGATTGTTGTACCAATTTCACTTGGA
- - - - - - - ctactgc
- - - - - - - - - - - - -ttccagc
- - - - - - - - - - - - - - - - - - - - - - -aattgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaga