1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...caaatatttttgttatatgccacttttgattttgaacttttgcatattgattattttcatgattgcaactctgaatccagtcctatactgttctttgcagATCAAGACGTCAATTACAGTGGGTATTATTGGATTGCCTAATGTTGGTAAAAGTAGCTTAATCAACAGTTTGAAGCGATCCCATGTTGTTAATGTGGGTG
species | Vitis vinifera |
transcript | Vv07s0005g05860.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCGCTGAAACACTCATTAAGTTACTGAAGAATTATTCAAGAAGCCATGAG ATCAAGACGTCAATTACAGTGGGTATTATTGGATTGCCTAATGTTGGTAAA
genomic: GAGCTGAAACACTCATTAAGTTACTGAAGAATTATTCAAGAAGCCATGAGgtacttaata ... ttctttgcagATCAAGACGTCAATTACAGTGGGTATTATTGGATTGCCTAATGTTGGTAAA
attgattattttcatgattgcaactctgaatccagtcctatactgttctttgcagATCAAGACGTCAATTACAGTGGGTATTATTGGATTGCCTAATGTTGGTAAAAGTAGCTTAATCAACAGTTTGAAGCGATCCCATGTTGTTAATGTGGGTG
tattgat putative branch site (score: 3)
ctgttcttt putative PPT
ttattttcatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaatatttttgttatatgccacttttgattttgaacttttgcatattgattattttcatgattgcaactctgaatccagtcctatactgttctttgcagATCAAGACGTCAATTACAGTGGGTATTATTGGATTGCCTAATGTTGGTAAAAGTAGCTTAATCAACAGTTTGAAGCGATCCCATGTTGTTAATGTGGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
caaatat
- - - - - - - - - gccactt
- - - - - - - - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caactct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccagtcc