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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttgtacatttttttatgtctatttctgtttcctctttagctcatagtgagccagatatttattatttacgcttcaaaaatccagagcttaaatttttgtatctgacagGCAGAGGTTTTGAATCAAGTACAGGAGGTTGGCCTTTTTAAACATGTAACAAAGTATTTATCTTCAGCAAATTCATGTTGCACAAAGCCACCATTTTCAG

Basic information

species Vitis vinifera
transcript Vv07s0005g03760.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110379966|gb|EC945197.1|EC945197
EST:     ATGGTGGTCAAAATCTAAGCCAAGAGGAGAAAGGAAGGCTTGCTTTCAAG                         GCAGAGGTTTTGAATCAAGTACAGGAGGTTGGCCTTTTTAAACATGTAACA
genomic: ATGGTGGTCAAAATCTAAGCCAAGAGGAGAAAGGAAGGCTTGCTTTCAAGgtttttgtac ... tatctgacagGCAGAGGTTTTGAATCAAGTACAGGAGGTTGGCCTTTTTAAACATGTAACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatatttattatttacgcttcaaaaatccagagcttaaatttttgtatctgacagGCAGAGGTTTTGAATCAAGTACAGGAGGTTGGCCTTTTTAAACATGTAACAAAGTATTTATCTTCAGCAAATTCATGTTGCACAAAGCCACCATTTTCAG
                                       tttttgt  CT-rich tract
                                  ttaaatttttgtatct  TA-rich tract