Sequence
atgc intronic sequence ATGC exonic sequence...cccttccctttttctgtctttatttctttccactctataccttataaatatcgttcaatcacttcttgtgcttatggttttttgaattttcgtgatgcagTATACTGGAATGATGTTACTGGAGGAGATTGCATCAATTTTTCTTACTCCTTGCTTGCTCTTATTTGTTGTTCCAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g03100.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA03G31890.1 (Glycine max), 3'ss of exon 5
--------------------------------cccttccctttttctgtctttatttctttccactctataccttataaatatcgttcaatcacttcttgtgcttatggttttttgaattttcgtgatgcagTATACTGGAATGATGTTACTGGAGGAGATTGCATCAATTTTTCTTACTCCTTGCTTGCTCTTATTTGTTGTTCCAAAG
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gtattctacctgaggttggcgtaaagcattcacattatgataaatctacccttatctgtt--cattctttacttgataacataggtttgaatataactt---ttcatgctatttt-----tttatggtgcagTATACTGGAATGATGTTACTTGAGGAGATGGCCTCAATTTTCCTCACTCCATACTTACTTTTGTGTATTGTCCCAAAG
upper sequence: Vv07s0005g03100.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G34630.1 (Glycine max), 3'ss of exon 6
----------------------------cccttccctttttctgtctttatttctttccactctataccttata-aatatcgttcaatcacttcttgtgcttatggttttttgaattttcgtgatgcagTATACTGGAATGATGTTACTGGAGGAGATTGCATCAATTTTTCTTACTCCTTGCTTGCTCTTATTTGTTGTTCCAAAG
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gtattctacctgaagtgttggcttaaagctttcacattatgataaatctaccctttatctgttcattcgttacatgataacataggtttgaatataactttccatgctattt---tttctatggtgcagTATACTGGAATGATGTTACTTGAGGAGATGGCCTCAATTTTCCTCACTCCATACTTACTTTTGTGTATTGTCCCAAAG
upper sequence: Vv07s0005g03100.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G18300.1 (Glycine max), 3'ss of exon 5
--------------------------------cccttccctttttctgtctttat-ttctttccactctataccttataaatatcgttcaatcacttcttgtgcttatggttttttgaattttcgtgatgcagTATACTGGAATGATGTTACTGGAGGAGATTGCATCAATTTTTCTTACTCCTTGCTTGCTCTTATTTGTTGTTCCAAAG
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gtactctttcaggtgttggtttaacacatttgcattaaagtagacccacccttatgtgtccttcattgtttttgttgtagcataggtttgaattcttctatttatgctaatattttt--ttttggtggtgcagTATAGTGGGATGATGTTACTTGAGGAGATGGCCTCGATTTTCCTTACTCCATACTTACTTCTGTTGGTTGTCCCAAAG
upper sequence: Vv07s0005g03100.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G04120.1 (Glycine max), 3'ss of exon 5
-------------------------------cccttccctttttctgtctttat-ttctttccactctataccttataaatatcgttcaatcacttcttgtgcttatggttttttgaattttcgtgatgcagTATACTGGAATGATGTTACTGGAGGAGATTGCATCAATTTTTCTTACTCCTTGCTTGCTCTTATTTGTTGTTCCAAAG
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gtactctttcaggtgttggttaacacatttgcattaaagtagaccaacccttgtgtgttcttcatttttttcgttgtag-cataggtt--tgaattcttctacttatgctaatattt-ttttggtggtgcagTATAGTGGGATGATGTTACTTGAGGAGATGGCCTCGATTTTCCTTACTCCATACTTACTTCTGTTGGTTGTCCCAAAG
upper sequence: Vv07s0005g03100.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT2G31260.1 (Arabidopsis thaliana), 3'ss of exon 6
-cccttccctttttctgtctttatttctttccactctataccttataaatatcgttcaatcacttcttgtgc-ttatggttttttgaattttcgtgatgcagTATACTGGAATGATGTTACTGGAGGAGATTGCATCAATTTTTCTTACTCCTTGCTTGCTCTTATTTGTTGTTCCAAAG
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gctaactttttgggttctttttatgatattccttcttggtctctactactttc--tgaatgaatttatataaatgatgctaatgaaaatttctgcacctcagTATACTGGAATGATGCTATTGGAGGAGATAGCTTCAATCTTCATCACACCATTTTTGCTGATGTTTGTCGTGCCAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatatcgttcaatcacttcttgtgcttatggttttttgaattttcgtgatgcagTATACTGGAATGATGTTACTGGAGGAGATTGCATCAATTTTTCTTACTCCTTGCTTGCTCTTATTTGTTGTTCCAAAG
ttttcgt CT-rich tract
ttttttgaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cccttccctttttctgtctttatttctttccactctataccttataaatatcgttcaatcacttcttgtgcttatggttttttgaattttcgtgatgcagTATACTGGAATGATGTTACTGGAGGAGATTGCATCAATTTTTCTTACTCCTTGCTTGCTCTTATTTGTTGTTCCAAAG
cccttcc
- - - - - -ttctgtc
- - - - - - - - - - - - - - tccactc
- - - - - - - - - - - - - - - - - - - - - -ataaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttatg