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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatcatgataacctgtattcttctccaaaatgtttagtttgctgtttttggtggaacacatgctgtatgttggctgggcatgatgagtttgtttgttctcagGTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTCGTGGTTATTTTCCTAATCATATACTATCTCACTAGGTGAAAAACCTATG

Basic information

species Vitis vinifera
transcript Vv07s0005g02990.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g02990.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G101571_T02 (Zea mays), 3'ss of exon 5
gtatgatcatgataacctgtattcttctccaaaatgtttagtttgctgtttttggtggaacacatgctgtatgttggctgggca-tgatgagtttgtt--tgttctcagGTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTCGTGGTTATTTTCCTAATCATATACTATCTCACTAGGTGAAAAACCTATG
                                        ||  ||       |    ||   |    ||| |  |  || ||  |  |||| |  |   |||   |||||||||||||| | ||||||||||||||||   || || || ||||||||||| |   |||| ||  |  | |||||  | || ||||  || || |   
----------------------------------------gtaagcgacaagagaaacaattaaattagtaggccgattgtgcccttctgagatgatccatgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTCGTCGCCCTTTTTCTGCTGGTTTACTACTTGACCAGGTAGAAGACATGAC

upper sequence: Vv07s0005g02990.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G18170.2 (Glycine max), 3'ss of exon 5
------------------------------------------------------------gtatgatc-atgataacctgtattcttctccaaaatgt----ttagtttgctgtttttggtggaacacatgctgtatgttggctgggcatgatgagtttgttt--gttctcagGTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTCGTGGTTATTTTCCTAATCATATACTATCTCACTAGGTGAAAAACCTATG
                                                             | || ||   || ||  |  ||   | |   |   ||    ||   || |   |   | |  |     |  | |    || ||     | ||||  |||| |   || ||||||||||||||||| ||| ||||| || |||||| ||||||| ||||| || || ||  |||| || || ||||||||||| ||||||| |     || | 
gtatgtggactttaaatcctgaatgcactaatatatacatttgttgtcttctcctttcctttttgctccgggagaatgtcaatagatgtggcaggagtagtgttgtcttccctctcacgatcaagtttttatttttccatgtctttctttaatgatcttgtgtcatttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTTGTCGTGCTTTTTCTTATAATATACTATCTGACTAGGTAATTGGTCTTTC

upper sequence: Vv07s0005g02990.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G04020.1 (Glycine max), 3'ss of exon 5
gtatgatcatgataa-cctgtattcttctccaaaatgtttagtttgctgtttttggtggaacacatgctgtatgtt-------ggctgggcatgatgagtttgttt--gttctcagGTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTCGTGGTTATTTTCCTAATCATATACTATCTCACTAGGTGAAAAACCTATG
||||| | |   |||  ||  | |   ||   | |  |||  | |  |   | |   ||| ||  |  | | | ||       | ||     | ||||  |||| |   || ||||||||||||||||| ||| ||||| || |||||| ||||||| ||||| || || ||  |||| || || ||||||||||| ||||||| |   | || | 
gtatgttgactttaaatcttgaatgcactaatatacatttgttgtcttccctctca-ggatcaagtattatttatttttccatgtctttttttaatgatcttgtgtcatttttcagGTATTTGAGACAAAATCCAGCCGAAGAATGTTTTCACTTGTAGCATCCTTTGTTGTGCTTTTTCTTATAATATACTATCTGACTAGGTAATTGATCTTTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110368599|gb|EC932587.1|EC932587
EST:     TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATG                         GTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
genomic: TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATGgtatgatcat ... ttgttctcagGTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
EST: gi|34549774|gb|CF518006.1|CF518006
EST:     TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATG                         GTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
genomic: TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATGgtatgatcat ... ttgttctcagGTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
EST: gi|30306129|gb|CB982923.1|CB982923
EST:     TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATG                         GTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
genomic: TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATGgtatgatcat ... ttgttctcagGTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
EST: gi|110371595|gb|EC935706.1|EC935706
EST:     TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATG                         GTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
genomic: TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATGgtatgatcat ... ttgttctcagGTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
EST: gi|29782805|gb|CB348441.2|CB348441
EST:     TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATG                         GTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATCC
genomic: TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATGgtatgatcat ... ttgttctcagGTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
EST: gi|110708420|gb|EE085941.1|EE085941
EST:     TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATG                         GTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
genomic: TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATGgtatgatcat ... ttgttctcagGTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
EST: gi|110405426|gb|EC970967.1|EC970967
EST:     TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATG                         GTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
genomic: TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATGgtatgatcat ... ttgttctcagGTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
EST: gi|30306203|gb|CB982997.1|CB982997
EST:     TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATG                         GTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
genomic: TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATGgtatgatcat ... ttgttctcagGTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
EST: gi|71878443|gb|DT027498.1|DT027498
EST:     TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATG                         GTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
genomic: TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATGgtatgatcat ... ttgttctcagGTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
EST: gi|34550262|gb|CF518480.1|CF518480
EST:     TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATG                         GTGTTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
genomic: TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATGgtatgatcat ... ttgttctcagGTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
EST: gi|110724887|gb|EE101110.1|EE101110
EST:     TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATG                         GTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
genomic: TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATGgtatgatcat ... ttgttctcagGTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
EST: gi|110378284|gb|EC943408.1|EC943408
EST:     TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATG                         GTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
genomic: TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATGgtatgatcat ... ttgttctcagGTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC
EST: gi|28969494|gb|CB348527.1|CB348527
EST:     TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATG                         GTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATCC
genomic: TGGATGCTTCAAGGGGAATCCTATCAGGAACTATGGATCGATTTAAAATGgtatgatcat ... ttgttctcagGTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtggaacacatgctgtatgttggctgggcatgatgagtttgtttgttctcagGTATTTGAGACAAGATCAAGCCGGAGGATGTTTACACTTGTGGCATCATTCGTGGTTATTTTCCTAATCATATACTATCTCACTAGGTGAAAAACCTATG
                                            tttgttctc  CT-rich tract
                                        tttgttt  TA-rich tract