1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggaatggtcacagggaatgaaatatttcttttatgtcttctacttttgggtggcttaaatttcagtagtagaccctaatgactaaatttctccattccagCTAACAGTATCATATGAGATTCCTCAGGTCTTGATCCCAGTGGCATCG
species | Vitis vinifera |
transcript | Vv07s0005g02120.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGGAGCTGTTCGGTTTTATCCAAAAAGTCCTTCATCATGCACAGTGGAG CTAACGGTATCATATGAGATTCCTCAGGTCTTGATCCCAGTGGCATCGEST: gi|110700786|gb|EE077744.1|EE077744
genomic: AGGAGCTGTTCGGTTTTATCCAAAAAGTCCTTCATCATGCACAGTAGAGgtgagtttac ... tccattccagCTAACAGTATCATATGAGATTCCTCAGGTCTTGATCCCAGTGGCATCG
EST: AGGAGCTGTTCGGTTTTATCCAAAAAGTCCTTCATCATGCACAGTAGAG CTAACGGTATCATATGAGATTCCTCANGTCTTGATCCCAGTGGCATCG
genomic: AGGAGCTGTTCGGTTTTATCCAAAAAGTCCTTCATCATGCACAGTAGAGgtgagtttac ... tccattccagCTAACAGTATCATATGAGATTCCTCAGGTCTTGATCCCAGTGGCATCG
ttgggtggcttaaatttcagtagtagaccctaatgactaaatttctccattccagCTAACAGTATCATATGAGATTCCTCAGGTCTTGATCCCAGTGGCATCG
gactaaa putative branch site (score: 2)
tttctccattcc CT-rich tract
taatgactaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaatggtcacagggaatgaaatatttcttttatgtcttctacttttgggtggcttaaatttcagtagtagaccctaatgactaaatttctccattccagCTAACAGTATCATATGAGATTCCTCAGGTCTTGATCCCAGTGGCATCG
- - - - - - - -aatgaaa
- - - - - - - - - - - - - - - - -tgtcttc
- - - - - - - - - - - - - - - - - - - - - - - -gggtggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accctaa