1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttaagcaaaagagcattcttttccatgggtgtgaaaggattacataacaaagaataattttgctaaaaaatgggtccatcatcacttatgtccttctcagTGATGTTAGCCAAATGGCTGGACGTTCTGATATAA
species | Vitis vinifera |
transcript | Vv07s0005g01960.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
aacaaagaataattttgctaaaaaatgggtccatcatcacttatgtccttctcagTGATGTTAGCCAAATGGCTGGACGTTCTGATATAA
tgctaaa putative branch site (score: 2)
cttatgtccttctc putative PPT
agaataattttgctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaagcaaaagagcattcttttccatgggtgtgaaaggattacataacaaagaataattttgctaaaaaatgggtccatcatcacttatgtccttctcagTGATGTTAGCCAAATGGCTGGACGTTCTGATATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- aagcaaa
- - - - - - gcattct
- - - - - - - - - - - - - gggtgtg
- - - - - - - - - - - - - - - - -aaaggat
- - - - - - - - - - - - - - - - - - - - - - - -caaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcatc