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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttatggaaattttgggaatatgttcttatttgtcacataatttattcttcctgcaattagcaatatagtttacttattgaattttcatttagGAATTGGATTGGGAGTCCATTGCTGCTGGATTACTGCACGACACTGTTGAGGATACGAATGTTGTCACTTTTGACAGTTTAGAAAGGGAGTTTGGTGCTA

Basic information

species Vitis vinifera
transcript Vv07s0005g00770.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G353147_T01 (Zea mays), 3'ss of exon 4
gtgagtt-atggaaattttgggaatatgttcttatttgtcacata-atttattcttcctgcaattagc-aatatagtttacttattgaatt--ttcatttagGAATTGGATTGGGAGTCCATTGCTGCTGGATTACTGCACGACACTGTTGAGGATACGAATGTTGTCACTTTTGACAGTTTAGAAAGGGAGTTTGGTGCTA
   | || || || | |  | ||   | |  | ||       ||  | || | | | ||  |   ||  ||| ||  ||      ||  ||  |  | ||||||| | || ||||| ||||| |||||||| ||| |||| ||||||||||| ||||||||||| || |||||||| ||  ||||||  ||||||||  | |
--aatttgattgacaatcagtgacgctatggtgatgcaatctatgtacttgtccctactatacacagtgaatctaagttctactctgctttgatataattagGAACTTGACTGGGAATCCATCGCTGCTGGTTTATTGCATGACACTGTTGAAGATACGAATGTGGTTACTTTTGAAAGAATAGAAAATGAGTTTGGGCCAA

upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G40050.1 (Glycine max), 3'ss of exon 5
gtgagttatggaaattttgggaatatgttcttatttgtcacataatttattcttcctgcaattagcaatatagtttacttattgaatt-ttcatttagGAATTGGATTGGGAGTCCATTGCTGCTGGATTACTGCACGACACTGTTGAGGATACGAATGTTGTCACTTTTGACAGTTTAGAAAGGGAGTTTGGTGCTA
|||||| ||| |||  |        | | |  ||||   || |||||  |   |    ||| |  | ||||   | |   |   ||   ||  | |||||| | || |||||||| ||||||||||||||||| || || || ||||||||||| |||||||| |||||||| ||  ||||   ||| ||||||||||
gtgagtcatgaaaaaatgcttcccttttgccaattt--tacttaattagtgtgtataacaact--ctatatttatgatggaaccaaccatttgtctagGAACTTGACTGGGAGTCGATTGCTGCTGGATTACTTCATGATACAGTTGAGGATACAAATGTTGTTACTTTTGAGAGGATAGAGGAGGAATTTGGTGCTA

upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA03G37450.1 (Glycine max), 3'ss of exon 7
gtgagttatggaaattttgggaatatgttcttatttgtcacataatttattcttcctgcaattag-caatatagtttacttattgaatt-ttcatttagGAATTGGATTGGGAGTCCATTGCTGCTGGATTACTGCACGACACTGTTGAGGATACGAATGTTGTCACTTTTGACAGTTTAGAAAGGGAGTTTGGTGCTA
|||||| ||| | |       |||   | | | |||| || ||    |    | | |  ||  |  ||||||   | |   ||  ||   ||  | |||||| | || |||||||| ||||||||||||||||| || || || ||||||||||| ||||| || |||||||| ||  ||||   ||| ||||||||||
gtgagtcatgaaga-------aatgcttccctttttgccaaatttacttaagtgcgtataacaaatcaatatttatgatggatccaaccatttgtctagGAACTTGACTGGGAGTCGATTGCTGCTGGATTACTTCATGATACAGTTGAGGATACAAATGTCGTTACTTTTGAGAGGATAGAGGAGGAATTTGGTGCTA

upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT4G02260.1 (Arabidopsis thaliana), 3'ss of exon 5
gtgagttatg-gaaattttgggaatatgttcttatttgtcacataatttattcttcctgcaattagcaatatagtttacttattgaattttcatttagGAATTGGATTGGGAGTCCATTGCTGCTGGATTACTGCACGACACTGTTGAGGATACGAATGTTGTCACTTTTGACAGTTTAGAAAGGGAGTTTGGTGCTA
|||||||  | || |  ||| |||||||   | |  ||    |  |||  ||      | ||  |||   ||| || |||| ||| | ||  ||  ||||||||||||||||||| |||| |||||||||||| || ||||| || |||||||| ||| |  | |||||||| |   |||||   ||||||||||| |
gtgagttgcgtgatacgttgtgaatatggattcacatg----aggattagtt------ggaa--agcttaataatt-actt-ttgtacttgtat--agGAATTGGATTGGGAGTCTATTGTTGCTGGATTACTACATGACACAGTCGAGGATACAAATTTCATTACTTTTGAAAAGATAGAAGAAGAGTTTGGTGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatttattcttcctgcaattagcaatatagtttacttattgaattttcatttagGAATTGGATTGGGAGTCCATTGCTGCTGGATTACTGCACGACACTGTTGAGGATACGAATGTTGTCACTTTTGACAGTTTAGAAAGGGAGTTTGGTGCTA
                                            ttttcattt  CT-rich tract
                        aatatagtttacttat  TA-rich tract