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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcccattctcatctcatcactgcttttcaatttctttttcttagaacttcaatcatgccttttttcatcaattttttcagGCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCAGATAACTTCATATGTTCTCTGGTACCAGGAACTCCTTTCTCCCAAGCCC

Basic information

species Vitis vinifera
transcript Vv07s0005g00740.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77586578|gb|DV222413.1|DV222413
EST:     CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAG                         GCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCA
genomic: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAGgtcccattct ... attttttcagGCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCA
EST: gi|161715260|gb|FC065809.1|FC065809
EST:     CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAG                         GCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCA
genomic: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAGgtcccattct ... attttttcagGCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCA
EST: gi|156739183|gb|EV243304.1|EV243304
EST:     CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAG                         GCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCA
genomic: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAGgtcccattct ... attttttcagGCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCA
EST: gi|110687298|gb|EE064584.1|EE064584
EST:     CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAG                         GCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCA
genomic: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAGgtcccattct ... attttttcagGCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCA
EST: gi|71874084|gb|DT023139.1|DT023139
EST:     CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAG                         GCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCA
genomic: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAGgtcccattct ... attttttcagGCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCA
EST: gi|110701944|gb|EE080092.1|EE080092
EST:     CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAG                         GCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCA
genomic: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAGgtcccattct ... attttttcagGCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCA
EST: gi|71877408|gb|DT026463.1|DT026463
EST:     CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAG                         GCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGC
genomic: CATTTGGATGGGATAACAAGCATGTTGGAGCAAGGATTCTTCTCTCTAAGgtcccattct ... attttttcagGCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaatttctttttcttagaacttcaatcatgccttttttcatcaattttttcagGCATTCCTTCTCCAAAGGGTGCAGTCCCTCCATGATTACAAAGGTCATGCAGATAACTTCATATGTTCTCTGGTACCAGGAACTCCTTTCTCCCAAGCCC
                                ccttttttcatcaatt  CT-rich tract
                                  ttttttcatcaatttt  TA-rich tract