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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcaactctttaattgactgttcttgtttgttgtttacttcttatttaccttgacagttcttgtttgctcttcaaattcatgtttcatccgatttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACAATTAAATATCTTCGAGTTCCTGATGAG

Basic information

species Vitis vinifera
transcript Vv07s0005g00230.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g00230.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os01g15310.1 (Oryza sativa), 3'ss of exon 3
gtaatcaactctttaattgactgttcttgttt--gttgtttacttcttatttaccttgacagttcttgtttgct-----cttcaaattcatgtttcatccgatttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACAATTAAATATCTTCGAGTTCCTGATGAG
              |||||  ||||||  |||  ||  |||  |||  |||    |   |  ||  | | || |     ||      ||||  || ||     | | || ||||||| |||| ||||||||| ||||| || || |||||||||||||| || || || |||||||| ||||||||||||
------------cgaattgtgtgttctcttttgggtcatttggttccaattggtttgatcgtttagtttgtgatgaatgctgtttcctcattgtttatggttgtcattgcagGATGGTGATAAGTTTTGGAGGATGCCAGAATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAG

upper sequence: Vv07s0005g00230.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G095114_T01 (Zea mays), 3'ss of exon 3
-----------------------------------------------gtaatcaactctttaattg-actgttcttgtttgttgtttacttcttatttaccttga-------cagttcttgtttgctcttca--aattcatgtttcatccgatttaa--tgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACAATTAAATATCTTCGAGTTCCTGATGAG
                                               | ||   | |  |||| || | ||||    ||||  ||  |  |  || | || ||         ||||| ||  |  || | |   | |  | ||||     |  |  |  || ||||||| || | ||||||||| ||||| ||||| ||||| |||||||| || ||||| |||||||||||||||||||||
gtgaaaaatctggtgcccttgattcccattgtgataggttcttgttagcaaaagattagttaagtgcattgtttgattttgaggtgaatctgatagtaacattatggggtaccagttatttctgtctttcctgtagtaaaggtttataatggctggaattgcagGATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG

upper sequence: Vv07s0005g00230.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G038606_T02 (Zea mays), 3'ss of exon 3
gtaatcaactctttaat--tgactgttcttgtttgttgtt-tacttcttatttaccttgacagttcttgtttgctcttcaaattcatgtttcatccgatttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACAATTAAATATCTTCGAGTTCCTGATGAG
 |  |  |   |  |||  | ||  |    | |    ||| | || ||   ||| ||||  ||||     | | | |     || ||| |   ||  |||    | |||| || || | ||||||||| ||||| ||||| ||||| || ||||| || ||||| |||||||||||||||||||||
-tggttgaaattcaaatagtaacaatgtggggtctcagttatcctgctctattagcttgtgagtttcctgtagttat---ggtttatgatggctcgaatt----gcagGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAG

upper sequence: Vv07s0005g00230.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G17430.2 (Glycine max), 3'ss of exon 3
gtaatcaactctttaattgactgttcttgtttgttgttt---acttcttatttaccttgacagttcttgtttgctcttcaaatt-catgtttcatccgatttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACAATTAAATATCTTCGAGTTCCTGATGAG
||||  | || |||      || | | ||  |    | |   |  |  | ||  | |       | ||  |||||  | || || ||  ||  |   |    |||  ||||||||||||| |||||| | ||||||||||||||||| ||||| ||||| ||||| || ||||| ||||||||||||
gtaacgatcttttttcactgctctccctgcattcaatctcagatattgtcttctcatgtgtgaatgtttgttgctacttaacttacaacttgaaattggc--aattcagGATGGAGATAGATTTTGGCGTATGCCTGAGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAG

upper sequence: Vv07s0005g00230.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA19G39780.1 (Glycine max), 3'ss of exon 3
gtaatcaactctttaat-tgactgttcttgtttgttgtttacttcttatttaccttgacagttcttgtttgctcttcaaattcatgtttcatccgatttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACAATTAAATATCTTCGAGTTCCTGATGAG
             |||| |  || ||    |   ||| ||  || || ||   ||||  | ||    | || |    |  ||    |||||   |    ||||||||| |||||||| |||||||| |||||||| ||||| || || || |||||||| || || ||||||||||||||||||
------------gtaatgttgcttttacgatcccttgcttgttttttgtt-gtcttg-taatttgattgtgatggaaaggtttg-atttcaattggc--aatgtagGACGGAGATAGATTTTGGAGGATGCCTGAATGCTATATACGAGGCAATACAATCAAGTACCTTCGAGTTCCTGATGAG

upper sequence: Vv07s0005g00230.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA10G02380.1 (Glycine max), 3'ss of exon 3
gtaatcaactctttaattgactgttcttgtttgttgtttacttcttat-ttaccttgacagttcttgtttgctcttcaaattcatgtttca---tccgatt--taatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACAATTAAATATCTTCGAGTTCCTGATGAG
||||  | || |||   | ||||||||    ||   |     ||  || ||  |||  ||  | |   |  || ||  || | |  || ||   |   |||   |||  ||||||||||||| |||||| | ||||| ||||||||||| || || ||||| || || || ||||| ||||||||||||
gtaacgatcttttt---tcactgttctc-cctgcattcactctcagatattgtcttctcatatgtgaatgtctgttacaacttaacttacaatttgaaattggcaattcagGATGGAGATAGATTTTGGCGTATGCCCGAGTGCTACATTCGCGGCAATACCATAAAGTACCTTCGGGTTCCTGATGAG

upper sequence: Vv07s0005g00230.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G27720.1 (Arabidopsis thaliana), 3'ss of exon 4
gtaatca-actctttaattgactgttcttgtttgttgtttacttcttatttaccttgacagttcttgtttgctcttcaaattcatgtttcatccgatttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACAATTAAATATCTTCGAGTTCCTGATGAG
|| |||  |   ||| ||    || |     |  |  |||  ||    ||     ||| | ||  |||        |  ||  || || |  |    ||| | ||||| |||||||| |||||||| ||||| || || || |||||||| || ||||| || || ||||||||||| ||||||
gttatcttatgttttcatatgttgatacaaat-atactttgtttagacttcgtgatgaaattttgtgtagctgacactcatatattttgctgcttgattactctagGACGGAGATAGATTTTGGAGGATGCCGGAATGTTATATCCGTGGTAACACAATCAAGTACCTTCGAGTTCCGGATGAG

upper sequence: Vv07s0005g00230.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: PP1S36_327V6.2 (Physcomitrella patens), 3'ss of exon 2
----------------------------------------gtaatcaactcttt---aattgactgttcttgtttgttgt---------ttacttcttatt-taccttgacagttcttgtttgctcttcaaattcatgtttcatccg-atttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACAATTAAATATCTTCGAGTTCCTGATGAG
                                        || |||  |    |   |  ||   |||| | ||| |  |         ||| ||    || | | | ||  ||| ||| || |  ||    || ||  |  ||  |     | |||||||||| ||  |||| ||||| |||||||| |||||||| || || ||||| || |||||| | || ||||||||||||
gtgattatttttgctaccattatctattagggttttcaaagtgatctgcctcgtcccagctgctggttcatatttatattgcagatgaattaatttgagttattcttcgattgttattgatt-ccttttggttttataatggatatgtgggcattgtagGATGGTGACCGGTTCTGGAGGATGCCTGAATGCTACATTCGAGGAAATACTATAAAATATTTGCGGGTTCCTGATGAG

upper sequence: Vv07s0005g00230.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ10085 (Selaginella moellendorffii), 3'ss of exon 2
gtaatcaactctttaattgactgttcttgtttgttgtttacttcttatttaccttgacagttcttgtttgctcttcaaattcatgtttcatccgatttaa-tgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACAATTAAATATCTTCGAGTTCCTGATGAG
                                                                 |||| ||| |    ||| | | ||||||   ||   |  ||||||||||  |||||||||||||||| |||||||||||| | || || || || || |||||||| ||||| || |||
-----------------------------------------------------------------gttttctccttcctttcttttctcatccttcttctctccagGATGGAGACCGGTTTTGGAGAATGCCCGAGTGCTACATCAGGGGCAACACCATCAAGTATCTTCGTGTTCCAGACGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349828814|gb|FQ419147.1|FQ419147
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|349819985|gb|FQ404707.1|FQ404707
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|349819983|gb|FQ404705.1|FQ404705
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|110372194|gb|EC936345.1|EC936345
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|110383606|gb|EC947989.1|EC947989
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|349827595|gb|FQ422463.1|FQ422463
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|351029470|gb|FQ436864.1|FQ436864
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|110692708|gb|EE068197.1|EE068197
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|351012236|gb|FQ426958.1|FQ426958
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|351044635|gb|FQ443166.1|FQ443166
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|351025082|gb|FQ433499.1|FQ433499
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|349828184|gb|FQ415512.1|FQ415512
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|351056955|gb|FQ443582.1|FQ443582
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|110374587|gb|EC939452.1|EC939452
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|351038850|gb|FQ448493.1|FQ448493
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|110372487|gb|EC936658.1|EC936658
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|352790730|gb|FQ478278.1|FQ478278
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
EST: gi|349828185|gb|FQ415513.1|FQ415513
EST:     GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAA                         GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA
genomic: GTGATACTTGGATGAACATTCATCTTCGGGAAGTTATCTGTACCTCAAAAgtaatcaact ... tttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accttgacagttcttgtttgctcttcaaattcatgtttcatccgatttaatgtagGATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACAATTAAATATCTTCGAGTTCCTGATGAG
                                            atttaat  putative branch site (score: 4)
                                            atttaatgta  TA-rich tract