1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttcttagcatggatctaattaaactgctatttctttatcatttgatagtattcttttaaatcactgaatgcgaattaagaacaccttattgtattttcagGTTTCATTTGTGGATTCGTGGTTCCTATCATTGAATCCAATTAAGCGGCTACTTCTCCGGATAATGAAGAAATCTAAGCCTGATGGAAAGAGTGTGCTCC
species | Vitis vinifera |
transcript | Vv06s0061g01020.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACCCTTTTTTGATGCCTTCAGTGACTCAAAAAATGTTCAGCTGTATGAG GTT-CATTTGTGGATTCGTGGTTCCTATCATTGAATCCAATEST: gi|110405980|gb|EC971538.1|EC971538
genomic: AACCCTTTTTTGATGCCTTCAGTGACTCAAAAAATGTTCAGCTGTATGAGgtactttaat ... gtattttcagGTTTCATTTGTGGATTCGTGGTTCCTATCATTGAATCCAAT
EST: AACCCTTTTTTGATGCCTTCAGTGACTCAAAAAATGTTCAGCTGTATGAG GTTTCATTTGTGGATTCGTGGTTCCTATCATTGAATCCAATTAAGCTGCTAEST: gi|71857084|gb|DT006139.1|DT006139
genomic: AACCCTTTTTTGATGCCTTCAGTGACTCAAAAAATGTTCAGCTGTATGAGgtactttaat ... gtattttcagGTTTCATTTGTGGATTCGTGGTTCCTATCATTGAATCCAATTAAGCGGCTA
EST: AACCCTTTTTTGATGCCTTCAGTGACTCAAAAAATGTTCAGCTGTATGAG GTTTCATTTGTGGATTCGTGGTTCCTATCATTGAATCCAATTAAGCGGCTAEST: gi|110429540|gb|EC996035.1|EC996035
genomic: AACCCTTTTTTGATGCCTTCAGTGACTCAAAAAATGTTCAGCTGTATGAGgtactttaat ... gtattttcagGTTTCATTTGTGGATTCGTGGTTCCTATCATTGAATCCAATTAAGCGGCTA
EST: AACCCTTTTTTGATGCCTTCAGTGACTCAAAAAATGTTCAGCTGTATGAG GTTTCATTTGTGGATTCGTGGTTCCTATCATTGAATCCAATTAAGCTGCTAEST: gi|110416998|gb|EC983018.1|EC983018
genomic: AACCCTTTTTTGATGCCTTCAGTGACTCAAAAAATGTTCAGCTGTATGAGgtactttaat ... gtattttcagGTTTCATTTGTGGATTCGTGGTTCCTATCATTGAATCCAATTAAGCGGCTA
EST: AACCCTTTTTTGATGCCTTCAGTGACTCAAAAAATGTTCAGCTGTATGAG GTTTCATTTGTGGATTCGTGGTTCCTATCATTGAATCCAATTAAGCTGCTA
genomic: AACCCTTTTTTGATGCCTTCAGTGACTCAAAAAATGTTCAGCTGTATGAGgtactttaat ... gtattttcagGTTTCATTTGTGGATTCGTGGTTCCTATCATTGAATCCAATTAAGCGGCTA
tagtattcttttaaatcactgaatgcgaattaagaacaccttattgtattttcagGTTTCATTTGTGGATTCGTGGTTCCTATCATTGAATCCAATTAAGCGGCTACTTCTCCGGATAATGAAGAAATCTAAGCCTGATGGAAAGAGTGTGCTCC
tattttc CT-rich tract
ttattgtattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttagcatggatctaattaaactgctatttctttatcatttgatagtattcttttaaatcactgaatgcgaattaagaacaccttattgtattttcagGTTTCATTTGTGGATTCGTGGTTCCTATCATTGAATCCAATTAAGCGGCTACTTCTCCGGATAATGAAGAAATCTAAGCCTGATGGAAAGAGTGTGCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - gcatgga
- - - - - - - - aattaaa
- - - - - - - - - - - -ctgctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaca