Sequence
atgc intronic sequence ATGC exonic sequencegtaaacatattttgctttcaaacttcagtcttgtgcatgaacagataattaactctgaaatcattgtatcacttttacatttgaatatagGTAGTAGCTATGCTGGTGGTCAGTGGGCAGCTGGAGATGAACCATTGTATTATATTGTATCGCCGAAGGATGTAGTTATTGCAAAACCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G19660.2 (Glycine max), 3'ss of exon 5
--------gtaaacatattttgctttcaaacttcagtcttgtgcatgaacagataattaactctgaaatcat-tgtatcact-tttacatttgaatatagGTAGTAGCTATGCTGGTGGTCAGTGGGCAGCTGGAGATGAACCATTGTATTATATTGTATCGCCGAAGGATGTAGTTATTGCAAAACCAAG
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agctccttcctaatatacaccttagtaatatattatttcttgacatatatttttcatgtatggaatggtcctgcgtaatattgttttcattcaaatgtagGTAGCAGTTATGCTGGGGGTCAGTGGGCTGCAGGTGATGAACCACTTTACTATATTGTATCTCTGAAGGATGTAGTTATTGCCAAACCAAG
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G08840.1 (Glycine max), 3'ss of exon 5
--------gtaaacatattttgctttcaaacttcagtcttgtgcatgaacagataattaactctgaaatcatt-gtatcactt-ttacatttgaatatagGTAGTAGCTATGCTGGTGGTCAGTGGGCAGCTGGAGATGAACCATTGTATTATATTGTATCGCCGAAGGATGTAGTTATTGCAAAACCAAG
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agctcctttctaatatacaccttagtaatatattatttcttgacatgtattttttatgtatggaatggtccttcataatattggtttcattcaaatgtagGTAGCAGTTATGCTGGGGGTCAGTGGGCTGCAGGTGATGAACCACTTTACTATATTGTATCTCTGAAGGATGTAGTTATTGCCAAACCAAG
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT1G08190.1 (Arabidopsis thaliana), 3'ss of exon 5
-gtaaacatattttgctttcaaacttcagtcttgtgcatgaacagataattaactctgaaatcattgtatcacttttacatttgaatatagGTAGTAGCTATGCTGGTGGTCAGTGGGCAGCTGGAGATGAACCATTGTATTATATTGTATCGCCGAAGGATGTAGTTATTGCAAAACCAAG
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gtcagagatttgttggaaagtagttt--gttttctaggggaaggaaagcatatgtttgaatacttactcggaaaattg-atgtgagtgtagGTAGTAGCTACGCTGGGGGACAGTGGGCAGCTGGTGATGAACCACTGTACTATATTGTTTCGCCAAAGGATGTTGTGATTGCCAAACCCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catgaacagataattaactctgaaatcattgtatcacttttacatttgaatatagGTAGTAGCTATGCTGGTGGTCAGTGGGCAGCTGGAGATGAACCATTGTATTATATTGTATCGCCGAAGGATGTAGTTATTGCAAAACCAAG
aattaac putative branch site (score: 2)
ttttacatttgaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaacatattttgctttcaaacttcagtcttgtgcatgaacagataattaactctgaaatcattgtatcacttttacatttgaatatagGTAGTAGCTATGCTGGTGGTCAGTGGGCAGCTGGAGATGAACCATTGTATTATATTGTATCGCCGAAGGATGTAGTTATTGCAAAACCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG