Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgcattttacaagtggaaggagctggagccttttccatatagctcctttatatttcacatatcttcggcatcattttgggtttgataattgcttttgcttttacttgctccttttagGTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTTATTTATGCCAATGTCACATATGAGGACATTCTTTTAAAG

Basic information

species Vitis vinifera
transcript Vv06s0009g01710.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g01710.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os05g40990.1 (Oryza sativa), 3'ss of exon 5
gtctgcattttacaagtggaaggagctggagccttttccatatagctcctttatatttcacatatcttcggcatcattttgggtttgataattgcttttgcttttacttgctccttttagGTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTTATTTATGCCAATGTCACATATGAGGACATTCTTTTAAAG
                        |   || ||||| | | |    |  ||| |||  ||  ||   |  |   ||  | | |||    ||||    |||   |  ||| ||     |||||||| ||||| ||  | |||||||||||||||||||| || |||||  | || |||||||||||||||||||| ||||||||| |||||
------------------------gtaagaccctttccaacaccaattttttttatggcatttaatatgtgagacacct-gtgttcttcaatt--cattgtcctcccttactg----tagGTCACAAGAGCAATTCTTGAAAACCCAAGTGACAATACGAAAGTGCACTTAATCTATGCCAATGTCACATATGATGACATTCTTCTAAAG

upper sequence: Vv06s0009g01710.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G133213_T01 (Zea mays), 3'ss of exon 5
gtctgcattttacaagtggaaggagctggagccttttccatatagctcctttatatttcacatatcttcggcatcattttgggtttgataattgcttttgcttttacttgctccttttagGTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTTATTTATGCCAATGTCACATATGAGGACATTCTTTTAAAG
                          |  | |||      ||||  | |  || ||    | ||      || ||||||     | ||| | ||   ||  |||   |    |     ||||  | ||||| ||  | || ||||| | |||||| |||||||| ||  | |||||||| |||||||||||||| ||||||||| | |||
-------------------gtaacattcaatcctgagttgtata-ttgcgatagatcatgc-tacaaaacgcttcatttccaagt-gatcagtgaccttattttctttctgccgccacagGTTGCCAGAGCAATTCTTGAGAACCCTAATGACAACACCAAGGTTCACTTAATTTATGCTAATGTCACATATGAAGACATTCTTCTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110720681|gb|EE096826.1|EE096826
EST:     TAGCTTTTGGGATGCTTGCTGGAGGCACTGGCATCACTCCAATGTTCCAG                         GTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTT
genomic: TAGCTTTTGGGATGCTTGCTGGAGGCACTGGCATCACTCCAATGTTCCAGgtctgcattt ... ctccttttagGTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTT
EST: gi|110388734|gb|EC953513.1|EC953513
EST:     TAGCTTTTGGGATGCTTGCTGGAGGCACTGGCATCACTCCAATGTTCCAG                         GTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTT
genomic: TAGCTTTTGGGATGCTTGCTGGAGGCACTGGCATCACTCCAATGTTCCAGgtctgcattt ... ctccttttagGTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTT
EST: gi|110401612|gb|EC968227.1|EC968227
EST:     TAGCTTTTGGGATGCTTGCTGGAGGCACTGGCATCACTCCAATGTTCCAG                         GTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTT
genomic: TAGCTTTTGGGATGCTTGCTGGAGGCACTGGCATCACTCCAATGTTCCAGgtctgcattt ... ctccttttagGTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTT
EST: gi|33406066|gb|CF211693.1|CF211693
EST:     TAGCTTTTGGGATGCTTGCTGGAGGCACTGGCATCACTCCAATGTTCCAG                         GTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTT
genomic: TAGCTTTTGGGATGCTTGCTGGAGGCACTGGCATCACTCCAATGTTCCAGgtctgcattt ... ctccttttagGTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTT
EST: gi|33405978|gb|CF211605.1|CF211605
EST:     TAGCTTTTGGGATGCTTGCTGGAGGCACTGGCATCACTCCAATGTTCCAG                         GTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTT
genomic: TAGCTTTTGGGATGCTTGCTGGAGGCACTGGCATCACTCCAATGTTCCAGgtctgcattt ... ctccttttagGTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTT
EST: gi|71864812|gb|DT013867.1|DT013867
EST:     TAGCTTTTGGGATGCTTGCTGGAGGCACTGGCATCACTCCAATGCTCCAG                         GTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTT
genomic: TAGCTTTTGGGATGCTTGCTGGAGGCACTGGCATCACTCCAATGTTCCAGgtctgcattt ... ctccttttagGTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTT
EST: gi|110688836|gb|EE067844.1|EE067844
EST:     TAGCTTTTGGGATGCTTGCTGGAGGCACTGGCATCACTCCAATGTTCCAG                         GTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTT
genomic: TAGCTTTTGGGATGCTTGCTGGAGGCACTGGCATCACTCCAATGTTCCAGgtctgcattt ... ctccttttagGTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTT
EST: gi|110718332|gb|EE095045.1|EE095045
EST:     TAGCTTTTGGGATGCTTGCTGGAGGCACTGGCATCACTCCAATGTTCCAG                         GTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTT
genomic: TAGCTTTTGGGATGCTTGCTGGAGGCACTGGCATCACTCCAATGTTCCAGgtctgcattt ... ctccttttagGTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcggcatcattttgggtttgataattgcttttgcttttacttgctccttttagGTCACTAGAGCCATATTAGAAAACCCAAGTGACAATACCAAGGTGCATCTTATTTATGCCAATGTCACATATGAGGACATTCTTTTAAAG
                 gtttgat  putative branch site (score: 5)
                          ttgcttttgcttttac  putative PPT
                  tttgataatt  TA-rich tract