Sequence
atgc intronic sequence ATGC exonic sequence...cttgatctgattctgtttcctttaatggtgtgctttttgtcctgtttctttccctcaacaatggcttctaagtgaaaacactcactctatgatgtcttagGTTGCTACAGCATGTGCACTTGCAGCATACAAATTACGCCGCCCTGTCCGGATATATATGAATCGCAAAACTGATATGATAATAGCAGGAGGAAGACATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g00770.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G44000.3 (Glycine max), 3'ss of exon 5
cttgatctgattctgtttcctttaatggtgtgctttttgtcctgtttctttccctcaacaatggcttctaagtgaaaacactcactctat---gatgtcttagGTTGCTACAGCATGTGCACTTGCAGCATACAAATTACGCCGCCCTGTCCGGATATATATGAATCGCAAAACTGATATGATAATAGCAGGAGGAAGACATC
|| | | | | | ||||||| || || | | | | | || ||| | | | || || | ||| ||||||| |||||||| | |||||| ||||||| || ||||| ||| |||| ||| | ||||| || || ||||||||||| || |||||||| ||||
--agaagtcactagtaaacagaagaaaacatgctttt-gttacagttgtgtgcattggaagcacatttattatgacatttgttatggcattcaaatcttgtagTGTGCTACATCATGTGCATTGGCAGCACACAAATTGCGGCGCCCAGTCAGGATGTATCTAAATCGAAAGACAGATATGATAATGGCTGGAGGAAGGCATC
upper sequence: Vv06s0009g00770.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA14G04950.1 (Glycine max), 3'ss of exon 5
cttgatctgattctgtttcctttaatggtgtgctttttgtcctgtttctttccctcaacaatggcttctaagtg---aaaacactcactctatgatgtcttagGTTGCTACAGCATGTGCACTTGCAGCATACAAATTACGCCGCCCTGTCCGGATATATATGAATCGCAAAACTGATATGATAATAGCAGGAGGAAGACATC
| | ||| | | | | | | | || | | || | ||||| || | || ||| || | ||| ||||||| ||| |||||||||| |||||| | ||||||| ||||| || | || ||| | ||||| || || |||||||||||||| |||||||| ||||
---agtgcagaaaagattcagtagtagagaagttatatatgaaaattacatatgtatgcatgtgtgtctaactgtctataatactaacaattggatcatgcagGTTGCCACATCATGTGCACTGGCAGCACAGAAATTACAGCGCCCAGTTAGAATGTATCTAAATCGAAAGACAGATATGATAATAGCCGGAGGAAGGCATC
upper sequence: Vv06s0009g00770.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT5G20960.2 (Arabidopsis thaliana), 3'ss of exon 5
cttgatctgattctgtttcctttaatggtgtgctttttgtcctgtttctttccctcaacaatggcttctaagtgaaaacactcactctatgatgtcttagGTTGCTACAGCATGTGCACTTGCAGCATACAAATTACGCCGCCCTGTCCGGATATATATGAATCGCAAAACTGATATGATAATAGCAGGAGGAAGACATC
| | | | | | || ||| || | ||||| | | | |||| | | | | || | | | | | ||||||||| |||| |||||||||||||||| |||| | | || ||||| ||| |||| |||| || ||||| |||||||||| | |||||||||||||
gtgagttcgcgtttcgaaagtactatcaagtgagagttttgatgttt--tggctttaacatttctctttctatcaacaaatt---------gttttctagGTTGCTGCAGCTTGTGCACTTGCAGCATCCAAAATGCAGCGTCCTGTGAGGACATATGTGAACCGAAAAACGGATATGATAACTACCGGAGGAAGACATC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctttccctcaacaatggcttctaagtgaaaacactcactctatgatgtcttagGTTGCTACAGCATGTGCACTTGCAGCATACAAATTACGCCGCCCTGTCCGGATATATATGAATCGCAAAACTGATATGATAATAGCAGGAGGAAGACATC
cactcac putative branch site (score: 2)
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttgatctgattctgtttcctttaatggtgtgctttttgtcctgtttctttccctcaacaatggcttctaagtgaaaacactcactctatgatgtcttagGTTGCTACAGCATGTGCACTTGCAGCATACAAATTACGCCGCCCTGTCCGGATATATATGAATCGCAAAACTGATATGATAATAGCAGGAGGAAGACATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - ctgattc
- - - - - - -tgtttcc
- - - - - - - - - - - - -tggtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcactc