Sequence
atgc intronic sequence ATGC exonic sequence...ttgaattgaattgacttgaataaactgagatatttttcatttgggaacttgtgtagatcgcttatcttgttctcatcatatagtcatttatttttgttagGTCCTGCACCATGGGTTATCCATGTTTTCAATCTTTCTATCCCTCATCAGTGGACAAGGACAGGTTTACATACTAATGGTTCTGTTCTCTGAGAGTACTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g08450.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA18G05520.1 (Glycine max), 3'ss of exon 5
------------------------------ttgaattgaattgacttgaataaact-gagatatttttcatttgggaacttgtgtagatcgctta--tcttgttctcatcatatagtcattta------tttttg----ttagGTCCTGCACCATGGGTTATCCATGTTTTCAATCTTTCTATCCCTCATCAGTGGACAAGGACAGGTTTACATACTAATGGTTCTGTTCTCTGAGAGTACTA
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cgtaagttgaaaagatattaaattttcttgccatgtttaatatattagatgatattagacattgtatttattttgcacattgaactcagtatccaggttttctgtttaggaagcggtaaactaactccgttcttggtatttaGGTTTTACACCATGGGTTGTCCATGTTTTCAATTATCCAATCTTTGCTATGTGGTCAAGGACAGATCTACATACTAATGGTTCTTTTCTCTGAGAGCACA-
upper sequence: Vv06s0004g08450.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G31750.1 (Glycine max), 3'ss of exon 5
----------------------------------ttgaattgaattgacttgaataaac--tgagatatttttcatttgggaacttgtgt--agatcgcttatcttgttctcatcatatag---tcatttatttttg-ttagGTCCTGCACCATGGGTTATCCATGTTTTCAATCTTTCTATCCCTCATCAGTGGACAAGGACAGGTTTACATACTAATGGTTCTGTTCTCTGAGAGTACTA
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gtaagttgaaaacatatcaagttttcttgctatgtttaatatattagataatattagacattgtgtttttttgcacattgaactcagtatccaggttttctgtttaggaagtggtaaactaacttcatttgtttgcaattagGTTTTACACCATGGGCTGTCCATGTTTTCTATTATCCAATCTTTGCTAAGTGGCCAAGGACTGATCTACATACTAATGGTTCTTTTCTCTGAGAGCACAA
upper sequence: Vv06s0004g08450.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA02G40520.1 (Glycine max), 3'ss of exon 4
-------------------------------------------------------------------------ttgaattgaattgacttgaataaactgagatatttttcatttgggaacttgtgtagatcgcttatcttgttctcatcatatag-----tcatttatttttgtt-agGTCCTGCACCATGGGTTATCCATGTTTTCAATCTTTCTATCCCTCATCAGTGGACAAGGACAGGTTTACATACTAATGGTTCTGTTCTCTGAGAGTACTA
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gtaagtagatataagtttttttgctattagtaacacattaacaatattatcaatactgacaatacattatatgccactatatttttattttatcttatgctcatctttttcctatcatatgttgaattcaatatttaagttatataagtggtaaacctacttcatcaatttacatttagGTTCTACACCACGGCCTATCCATAGGTTCTATTACACTATGTCTGCTAAGTGGTCAAGTTCACATCTACATACTAATGGTTCTTTTCTCTGAGAGCACTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122688769|gb|EC925291.1|EC925291EST: ACTTGGCAATGATTCTTTGGAATTTTCCAGCTTTAGGCGGTCTGGAGTAT GTCCTGCACCATGGGTTATCCATGTTTTCAATCTTTCTATCCCTCATCAGT
genomic: ACTTGGCAATGATTCTTTGGAATTTTCCAGCTTTAGGCGGTCTGGAGTATgtaagtacaa ... tttttgttagGTCCTGCACCATGGGTTATCCATGTTTTCAATCTTTCTATCCCTCATCAGT
EST:
gi|122689520|gb|EC940529.1|EC940529EST: ACTTGGCAATGATTCTTTGGAATTTTCCAGCTTTAGGCGGTCTGGAGTAT GTCCTGCACCATGGGTTATCCATGTTTTCAATCTTTCTATCCCTCATCAGT
genomic: ACTTGGCAATGATTCTTTGGAATTTTCCAGCTTTAGGCGGTCTGGAGTATgtaagtacaa ... tttttgttagGTCCTGCACCATGGGTTATCCATGTTTTCAATCTTTCTATCCCTCATCAGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacttgtgtagatcgcttatcttgttctcatcatatagtcatttatttttgttagGTCCTGCACCATGGGTTATCCATGTTTTCAATCTTTCTATCCCTCATCAGTGGACAAGGACAGGTTTACATACTAATGGTTCTGTTCTCTGAGAGTACTA
tttattttt CT-rich tract
atatagtcatttattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgaattgaattgacttgaataaactgagatatttttcatttgggaacttgtgtagatcgcttatcttgttctcatcatatagtcatttatttttgttagGTCCTGCACCATGGGTTATCCATGTTTTCAATCTTTCTATCCCTCATCAGTGGACAAGGACAGGTTTACATACTAATGGTTCTGTTCTCTGAGAGTACTA
- -aattgaa
- - - - - - - - -gaataaa