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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgtatatatattgactctcagatgagatgcttgcttgtgctttaatttgtgaattgttgatatatctaatatttgaatccaacgatttccatgttttttctatacacatgcagACGATTTTAAAAATTTCAGGGTTCACAGATAATTTATTAACTCATCTCCTAGCCGGCCTAGGTGCAGGTTTTTTTGCGGTCTGTATTGGTTCTCCCGTTG

Basic information

species Vitis vinifera
transcript Vv06s0004g05940.t01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349814387|gb|FQ398827.1|FQ398827
EST:     ATGCTATCATAAATGCTGCTGAGCTAGCCAGTTATGATCAAATAAAACAA                         ACGATTTTAAAAATTTCAGGGTTCACAGATAA
genomic: ATGCTATCATAAATGCTGCTGAGCTAGCCAGTTATGATCAAATAAAACAGgtaaatgtat ... acacatgcagACGATTTTAAAAATTTCAGGGTTCACAGATAA
EST: gi|351051586|gb|FQ450138.1|FQ450138
EST:     TGCTATCATAAATGCTGCTGAGCTAGCCAGTTATGATCAAAATAAA-CAG                         ACGATTTTAAAAATTTCAGGGTTCACAGATA
genomic: TGCTATCATAAATGCTGCTGAGCTAGCCAGTTATGATCAAA-TAAAACAGgtaaatgtat ... acacatgcagACGATTTTAAAAATTTCAGGGTTCACAGATA
EST: gi|349821879|gb|FQ413050.1|FQ413050
EST:     ATGCTATCATAAATGCTGCTGAGCTAGCCAGTTATGATCAAATAAAACAG                         ACGATTTTAAAAATTTC
genomic: ATGCTATCATAAATGCTGCTGAGCTAGCCAGTTATGATCAAATAAAACAGgtaaatgtat ... acacatgcagACGATTTTAAAAATTTC
EST: gi|351054855|gb|FQ462885.1|FQ462885
EST:     ATGCTATCATAAATGCTGCTGAGCTAGCCAGTTATGATCAAATAAAACAG                         ACGATTTTAAAAATTTCAGGGTTCACAGATAGTTTATTAACTCATCTCCTA
genomic: ATGCTATCATAAATGCTGCTGAGCTAGCCAGTTATGATCAAATAAAACAGgtaaatgtat ... acacatgcagACGATTTTAAAAATTTCAGGGTTCACAGATAATTTATTAACTCATCTCCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatatatctaatatttgaatccaacgatttccatgttttttctatacacatgcagACGATTTTAAAAATTTCAGGGTTCACAGATAATTTATTAACTCATCTCCTAGCCGGCCTAGGTGCAGGTTTTTTTGCGGTCTGTATTGGTTCTCCCGTTG
     atctaat  putative branch site (score: 3)
     atctaatatttgaat  TA-rich tract