Sequence
atgc intronic sequence ATGC exonic sequence...gtgcacaaaagtatagatggtgtatacaaagatgccaataggccatacaaagcagagaaaaaagaagtgtgtctaatatgatgtgtctttcatgtgacagAGAGTTCTGGAGCACTGCAGGGATCCAAAAACCCAGAGTAAAGTGATGGATGAGATTTTAGGATCTGTTAGCATGCTGGCACAAGATCAGTATGGCAATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G04060.2 (Glycine max), 3'ss of exon 7
gtgcacaaaagtatagatggtgtatacaaagatgccaataggccatacaaagcagagaaaaaagaagtgtgtctaatatgatgtgtctttcatgtgacagAGAGTTCTGGAGCACTGCAGGGATCCAAAAACCCAGAGTAAAGTGATGGATGAGATTTTAGGATCTGTTAGCATGCTGGCACAAGATCAGTATGGCAATT
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--------------gtaagattttttcagtgcttatgttactcctttt---gcatacctaaaatccctgaacttatcataat-tatcttttgcatgacagAGAGTACTGGAGCATTGCAAAGACCCTAACACCCAGCAAAAAGTTATGGATGAGATTTTAGGAGCAGTTAGCATGTTAGCCCAGGATCAGTATGGCAATT
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G14500.1 (Glycine max), 3'ss of exon 7
gtgcacaaaagtatagatggtgtatacaaagatgccaataggccatacaaagcagagaaaaaagaa-gtgtgtctaatatgatgtgtctttcatgtgacagAGAGTTCTGGAGCACTGCAGGGATCCAAAAACCCAGAGTAAAGTGATGGATGAGATTTTAGGATCTGTTAGCATGCTGGCACAAGATCAGTATGGCAATT
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------------gtaagttctcttcac-----tgcttatgtttctgttatcatgtataactaagatcatttgtcatataaga-ataccttctacacaacagAGAGTGCTGGAACATTGCGAAGACCCTACAACACAGCAGAAAGTTATGGATGAAATTTTAGGAGCAGTTAGCATGCTAGCTCAGGATCAGTATGGAAACT
upper sequence: Vv06s0004g05100.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G06450.3 (Glycine max), 3'ss of exon 6
gtgcacaaaagtatagatggtgtatacaaagatgccaataggccatacaaagcagagaaaaaagaagtgtgtctaatatgatgtgtctttcatgtgacagAGAGTTCTGGAGCACTGCAGGGATCCAAAAACCCAGAGTAAAGTGATGGATGAGATTTTAGGATCTGTTAGCATGCTGGCACAAGATCAGTATGGCAATT
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------------gtaagttctcttcac-----tgcttatgttactcttataatgtaccttagatcatt-tgtc--atataaaatacgttctacgcgacagCGAGTGCTGGAACACTGCAAAGACCCTACAACACAACAGAAAGTTATGGATGAAATTTTAGGAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacaaagcagagaaaaaagaagtgtgtctaatatgatgtgtctttcatgtgacagAGAGTTCTGGAGCACTGCAGGGATCCAAAAACCCAGAGTAAAGTGATGGATGAGATTTTAGGATCTGTTAGCATGCTGGCACAAGATCAGTATGGCAATT
gtctaat putative branch site (score: 3)
tgtctttc putative PPT
aaaaaagaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcacaaaagtatagatggtgtatacaaagatgccaataggccatacaaagcagagaaaaaagaagtgtgtctaatatgatgtgtctttcatgtgacagAGAGTTCTGGAGCACTGCAGGGATCCAAAAACCCAGAGTAAAGTGATGGATGAGATTTTAGGATCTGTTAGCATGCTGGCACAAGATCAGTATGGCAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - aaaagta
- - - - - - - -gatggtg
- - - - - - - - - - - -atacaaa
- - - - - - - - - - - - - - - -atgccaa
- - - - - - - - - - - - - - - - - - - - - ccataca
- - - - - - - - - - - - - - - - - - - - - - - - -aagcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaa