1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtctgcttaaatgagtttttctgctgggtctcacagataacataacaaaagatctcagtctgtgtgtttaactaagtttgtacccaaaaatgctttgcagTCCACCACAATCGGAAACCAGCTGAACTTGACATGCCTGAGCAATGGGAGAAGCAACATTTATTTATTGCCTGATGACAACACTTCCCAGGTTCAGCAGC
species | Vitis vinifera |
transcript | Vv06s0004g04890.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTGTCCCAACCTCTAAACGGAGCTGTAAATCGCAACAAGTCTATTGTGAG TCCACCACAATCGGAAACCAGCTGAACTTGACATGCCTGAGCAATGGGAGAEST: gi|110364763|gb|EC928246.1|EC928246
genomic: GTGTCCCAACCTCTAAATGGAGCTGTAAATCGCAACAAGTCTATTGTGAGgtaactgatg ... tgctttgcagTCCACCACAATCGGAAACCAGCTGAACTTGACATGCCTGAGCAATGGGAGA
EST: GTGTCCCAACCTCTAAATGGAGCTGTAAATCGCAACAAGTCTATTGTGAG TCCACCACAATCGGAAACCAGCTGAACTTGACATGCCTGAGCAATGGGAGAEST: gi|33403921|gb|CF209548.1|CF209548
genomic: GTGTCCCAACCTCTAAATGGAGCTGTAAATCGCAACAAGTCTATTGTGAGgtaactgatg ... tgctttgcagTCCACCACAATCGGAAACCAGCTGAACTTGACATGCCTGAGCAATGGGAGA
EST: GTGTCCCAACCTCTAAACGGAGCTGTAAATCGCAACAAGTCTATTGTGAG TCCACCACAATCGGAAACCAGCTGAACTTGACATGCCTGAGCAATGGGAGA
genomic: GTGTCCCAACCTCTAAATGGAGCTGTAAATCGCAACAAGTCTATTGTGAGgtaactgatg ... tgctttgcagTCCACCACAATCGGAAACCAGCTGAACTTGACATGCCTGAGCAATGGGAGA
caaaagatctcagtctgtgtgtttaactaagtttgtacccaaaaatgctttgcagTCCACCACAATCGGAAACCAGCTGAACTTGACATGCCTGAGCAATGGGAGAAGCAACATTTATTTATTGCCTGATGACAACACTTCCCAGGTTCAGCAGC
gtttaac putative branch site (score: 3)
tttaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgcttaaatgagtttttctgctgggtctcacagataacataacaaaagatctcagtctgtgtgtttaactaagtttgtacccaaaaatgctttgcagTCCACCACAATCGGAAACCAGCTGAACTTGACATGCCTGAGCAATGGGAGAAGCAACATTTATTTATTGCCTGATGACAACACTTCCCAGGTTCAGCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- ctgctta
- - - - - - - - - -tctgctg
- - - - - - - - - - - - - - tctcaca
- - - - - - - - - - - - - - - - - -gataaca
- - - - - - - - - - - - - - - - - - - - - -aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccaaaa