Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaataaatatctcatctctcttatgtgatgttgacggttggattctaatgcagattaaattgtttatgctaactatctcaacctttttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACTACAATTGCTGCTCGACAAAGTGGATCTGGCATTTCTTGGCTTATTCCGT

Basic information

species Vitis vinifera
transcript Vv06s0004g04460.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g04460.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os01g05800.1 (Oryza sativa), 3'ss of exon 5
gtgaataaatatctcatctctcttatgtgatgttgacggttggattctaatgcagattaaattgtttatgctaactatctcaacctttttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACTACAATTGCTGCTCGACAAAGTGGATCTGGCATTTCTTGGCTTATTCCGT
     ||||  ||  |||   |||         | |   |||  |  | | |  ||||       || | |||| |  || |   | |||     |||||| |  |||||||||| ||||| |||||||| |||||||| || || || |||||||||||||| ||||||||  ||||||||||||||||  | || |
----gtaaaactcaaatcctgcttcc-------taatatttgcttcattaagaggatt-------ttgttctaagtggctta---tatttctctgaagGGATTACTGACAGAAGGATTTTTCTGGATTCCATCTTTGGGAGGCCCTACAACAATTGCTGCTCGGCAAAGTGGTGCTGGCATTTCTTGGCTCTTGCCTT

upper sequence: Vv06s0004g04460.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G14960.1 (Glycine max), 3'ss of exon 5
-------gtga-ataaatatctcatctctcttatgtgatgttgacggttggattctaatgcagattaaattgtttatgctaactatctcaacctttttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACTACAATTGCTGCTCGACAAAGTGGATCTGGCATTTCTTGGCTTATTCCGT
        ||| |||||  | |  | | |     | ||| | || ||    |||  |   ||||  | ||  ||| |||||| ||| | ||   ||| | |  ||||||||| | || ||||| ||  ||||||| |||||||||||||| || ||||| ||||||||| ||||||||||| |||| |||||||||||| |||| |
gtaattaatgatataaacttttattatttgagcagagatttcgatggacaaattaca-cacagaaaatatgattt-tgctaattatgttaaatctttaatttgaagGGACTGCTAACCGAAGGTTTCCTTTGGATCCCCTCTTTGGGTGGTCCTACTACCATTGCTGCTAGACAAAGTGGAGCTGGAATTTCTTGGCTTTTTCCAT

upper sequence: Vv06s0004g04460.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G06920.1 (Glycine max), 3'ss of exon 5
---gtgaataaatatctcatctctc-ttatgt-------gatgttgacggttggattctaatgcagattaaattgtttat-gctaactatctcaacctttttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACTACAATTGCTGCTCGACAAAGTGGATCTGGCATTTCTTGGCTTATTCCGT
    | | ||| ||| | | || |  | || |       ||| |||| ||    |||  |   ||||  | ||  ||| | | ||| |||   ||   ||| | |  ||||||||| | || ||||| ||| ||||||| |||||||||||||| || ||||| ||||||||| ||||||||||| |||| || ||||||||| |||| |
gtaataattaattatataaacttttatcatttgagcggagattttgatggacaaattaca-cacagaaaatatgattttttgttaattatggaaaatctttaatttgaagGGACTGCTAACCGAAGGTTTTCTTTGGATCCCCTCTTTGGGTGGTCCTACTACCATTGCTGCTAGACAAAGTGGAGCTGGAATCTCTTGGCTTTTTCCAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349814872|gb|FQ410095.1|FQ410095
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGG
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGG
EST: gi|351048056|gb|FQ441228.1|FQ441228
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|351038970|gb|FQ457645.1|FQ457645
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGCGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|349821185|gb|FQ408772.1|FQ408772
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGT
EST: gi|351053570|gb|FQ462645.1|FQ462645
EST:     TACCCGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|351035254|gb|FQ458611.1|FQ458611
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|349808994|gb|FQ407443.1|FQ407443
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAG
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAG
EST: gi|351037204|gb|FQ457037.1|FQ457037
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGG
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGG
EST: gi|349809519|gb|FQ414409.1|FQ414409
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|349822872|gb|FQ398259.1|FQ398259
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGG
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGG
EST: gi|349824427|gb|FQ417814.1|FQ417814
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGGCCA-C
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGG-CCAAC
EST: gi|349817462|gb|FQ407252.1|FQ407252
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCCAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGTTTTTT-GGATTCCCCTCTT-GGGTGGGCCA
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCC-TCTTTGGGTGGGCCA
EST: gi|349825681|gb|FQ421780.1|FQ421780
EST:     ACCAGTCTGGATAGGTTTGTATCAAGCTCNTTTCAA-TGTGGCAAATGAG                         GGACTGTTGACAGAAGGG
genomic: ACCAGTCTGGATAGGTTTGTATCAAGCTC-TTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGG
EST: gi|349815532|gb|FQ400688.1|FQ400688
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGG
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGG
EST: gi|349832322|gb|FQ420883.1|FQ420883
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAA                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCCACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|351042878|gb|FQ451172.1|FQ451172
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGG
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGG
EST: gi|349829872|gb|FQ422185.1|FQ422185
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGG
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGG
EST: gi|349815709|gb|FQ400865.1|FQ400865
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACCGAAGGGTTTTTT-GGATTCCCTCTTTGGGTGGGGCCA-C
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGG-CCAAC
EST: gi|351053158|gb|FQ455615.1|FQ455615
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTTGGGTGGGCCAAC
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTT-GGGTGGGCCAAC
EST: gi|349816846|gb|FQ399714.1|FQ399714
EST:     ACCCGTCTGGATAGGTTTGTATCAAGCTCTTTTCAA-TGTGGCAAATGAG                         GGACTGTTGACAGAAGGGT
genomic: ACCAGTCTGGATAGGTTTGTATCAAGCTCTTT-CAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGT
EST: gi|352790292|gb|FQ481491.1|FQ481491
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|351022475|gb|FQ446997.1|FQ446997
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|110373005|gb|EC937208.1|EC937208
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCA
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCA
EST: gi|18458571|gb|BM436849.1|BM436849
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|349808495|gb|FQ405639.1|FQ405639
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAN                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGGCCA-C
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGG-CCAAC
EST: gi|351052838|gb|FQ456566.1|FQ456566
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAAGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|351024245|gb|FQ423668.1|FQ423668
EST:     TACCAGCCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAAGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|351033979|gb|FQ463034.1|FQ463034
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCC
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCC
EST: gi|349823559|gb|FQ414969.1|FQ414969
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|110711190|gb|EE087433.1|EE087433
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAA-TGTGGCAAATGAA                         GGACTGTTGACAGAA
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAA
EST: gi|349819385|gb|FQ412279.1|FQ412279
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNNGGATTCCCTCTTTGGGTGGGCCAAC
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTT-GGATTCCCTCTTTGGGTGGGCCAAC
EST: gi|30327231|gb|CD010493.1|CD010493
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|32269560|gb|CD718719.1|CD718719
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|349813816|gb|FQ414050.1|FQ414050
EST:     TACCAGTCTGGATAGGTTTGTATCANGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|110394254|gb|EC958925.1|EC958925
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|351037566|gb|FQ462549.1|FQ462549
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|352799049|gb|FQ480898.1|FQ480898
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|352791382|gb|FQ480961.1|FQ480961
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGG
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGG
EST: gi|351027277|gb|FQ444526.1|FQ444526
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|351038919|gb|FQ457594.1|FQ457594
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGGTTCCCTCTTTGGGTGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|110374436|gb|EC939192.1|EC939192
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|351053162|gb|FQ455619.1|FQ455619
EST:     ACCAGTCTGGATAGGTTTGTATCAAGCTCTTTTCAA-TGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCAACT
genomic: ACCAGTCTGGATAGGTTTGTATCAAGCTCTTT-CAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT
EST: gi|27585311|gb|CB008006.1|CB008006
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGG
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGG
EST: gi|33402160|gb|CF207787.1|CF207787
EST:     TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAG                         GGACTGTTGACAGAAGGGNNNNNNNGGATTCCCTCTTTGGGTGGGCCAACT
genomic: TACCAGTCTGGATAGGTTTGTATCAAGCTCTTTCAAATGTGGCAAATGAGgtgaataaat ... ttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctaatgcagattaaattgtttatgctaactatctcaacctttttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACTACAATTGCTGCTCGACAAAGTGGATCTGGCATTTCTTGGCTTATTCCGT
                         tgctaac  putative branch site (score: 1)
                                        cctttttactc  putative PPT
          agattaaattgtttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgaataaatatctcatctctcttatgtgatgttgacggttggattctaatgcagattaaattgtttatgctaactatctcaacctttttactcaaagGGACTGTTGACAGAAGGGTTTTTTTGGATTCCCTCTTTGGGTGGGCCAACTACAATTGCTGCTCGACAAAGTGGATCTGGCATTTCTTGGCTTATTCCGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA