1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgcctcttatgtttatcaatacagaacatttttccctttttttttctcctgattattatgttctttttcacatgatatttgcgcagTCGAGGAAGCCTTGAATCACCCATTTTTGTTGCCTCTCCATGAGATCAACGAGGAGCCCATCTGCCCCTCTCCTTTCATCTTCGATTTTGAACAATCATC
species | Vitis vinifera |
transcript | Vv06s0004g03620.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGATCTTGTGGAGAAAATGCTAGTTTTTGATCCAAGCAAGCGCATAACTG TCGAGGAAGCCTTGAATCACCCATTTTTGTTGCCTCTCCATGAGATCAACGEST: gi|46911256|gb|CN546631.1|CN546631
genomic: GGATCTTGTGGAGAAAATGCTAGTTTTTGATCCAAGCAAGCGCATAACTGgtatgcctct ... atttgcgcagTCGAGGAAGCCTTGAATCACCCATTTTTGTTGCCTCTCCATGAGATCAACG
EST: GGATCTTGTGGAGAAAATGCTAGTTTTTGATCCAAGCAAGCGCATAACTG TCGAGGAAGCCTTGAATCACCCATTTTTGTTGCCTCTCCATGAGATCAACGEST: gi|71883171|gb|DT032226.1|DT032226
genomic: GGATCTTGTGGAGAAAATGCTAGTTTTTGATCCAAGCAAGCGCATAACTGgtatgcctct ... atttgcgcagTCGAGGAAGCCTTGAATCACCCATTTTTGTTGCCTCTCCATGAGATCAACG
EST: GAGAAAATGCTAGTTTTTGATCCAAGCAAGCGCATAACTG TCGAGGAAGCCTTGAATCACCCATTTTTGTTGCCTCTCCATGAGATCAACGEST: gi|33406388|gb|CF212015.1|CF212015
genomic: GAGAAAATGCTAGTTTTTGATCCAAGCAAGCGCATAACTGgtatgcctct ... atttgcgcagTCGAGGAAGCCTTGAATCACCCATTTTTGTTGCCTCTCCATGAGATCAACG
EST: GGATCTTGTGGAGAAAATGCTAGTTTTTGATCCAAGCAAGCGCATAACTG TCGAGGAAGCCTTGAATCACCCATTTTTGTTGCCTCTCCATGAGATCAACGEST: gi|71881780|gb|DT030835.1|DT030835
genomic: GGATCTTGTGGAGAAAATGCTAGTTTTTGATCCAAGCAAGCGCATAACTGgtatgcctct ... atttgcgcagTCGAGGAAGCCTTGAATCACCCATTTTTGTTGCCTCTCCATGAGATCAACG
EST: TTTTTGATCCAAGCAAGCGCATAACTG TCGAGGAAGCCTTGAATCACCCATTTTTGTTGCCTCTCCATGAGATCAACGEST: gi|352768504|gb|FQ467460.1|FQ467460
genomic: TTTTTGATCCAAGCAAGCGCATAACTGgtatgcctct ... atttgcgcagTCGAGGAAGCCTTGAATCACCCATTTTTGTTGCCTCTCCATGAGATCAACG
EST: GGATCTTGTGGAGAAAATGCTAGTTTTTGATCCAAGCAAGCGCATAACTG TCGAGGAAGCCTTGAATCACCCATTTTTGTTGCCTCTCCATGAGATCAACGEST: gi|34544291|gb|CF512523.1|CF512523
genomic: GGATCTTGTGGAGAAAATGCTAGTTTTTGATCCAAGCAAGCGCATAACTGgtatgcctct ... atttgcgcagTCGAGGAAGCCTTGAATCACCCATTTTTGTTGCCTCTCCATGAGATCAACG
EST: GGATCTTGTGGAGAAAATGCTAGTTTTTGATCCAAGCAAGCGCATAACTG TTGAGGAAGCCTTGAATCACCCATTTTTGTTGCCTCTCCATGAGATCAACG
genomic: GGATCTTGTGGAGAAAATGCTAGTTTTTGATCCAAGCAAGCGCATAACTGgtatgcctct ... atttgcgcagTCGAGGAAGCCTTGAATCACCCATTTTTGTTGCCTCTCCATGAGATCAACG
ttccctttttttttctcctgattattatgttctttttcacatgatatttgcgcagTCGAGGAAGCCTTGAATCACCCATTTTTGTTGCCTCTCCATGAGATCAACGAGGAGCCCATCTGCCCCTCTCCTTTCATCTTCGATTTTGAACAATCATC
tcctgat putative branch site (score: 3)
attattatgttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcctcttatgtttatcaatacagaacatttttccctttttttttctcctgattattatgttctttttcacatgatatttgcgcagTCGAGGAAGCCTTGAATCACCCATTTTTGTTGCCTCTCCATGAGATCAACGAGGAGCCCATCTGCCCCTCTCCTTTCATCTTCGATTTTGAACAATCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG