Sequence
atgc intronic sequence ATGC exonic sequencegttctggttctttatgccttgttattcttgaatttttgttttatgtgaagcctattttatagttttgttcataatagattgttcatttgacagGAGATGGGGCCTGGACCATCGAACCAATCTGGTTTGAGATTTATTAGTGGGATTATTTGCAAGTCCAAAGCTCTTAGATTTGAGAGGATGTTATTTCGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G15730.1 (Glycine max), 3'ss of exon 5
------------------------------gttctggttctttatgccttgttattcttgaattt--ttgttttatgtgaagcctattttatagt----tttgttcataatagattgttcatttgacagGAGATGGGGCCTGGACCATCGAACCAATCTGGTTTGAGATTTATTAGTGGGATTATTTGCAAGTCCAAAGCTCTTAGATTTGAGAGGATGTTATTTCGTG
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gttccttgtaacatctcttattactttgatatttttctactataaaaactgtaaattctgatactagtttttttttttcaattttatcttgtcatgtaagttaactgttataaatggtttgttttacagGAAATGAGGCCTGCACCATCAAATCAATCTGGTTTAAGATTTATCAGTGGGATGATTTGTAAATCCAAAGTTCTTAGGTTTGAAAGGATGTTGTTTCGTG
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G07740.1 (Glycine max), 3'ss of exon 5
-------------------------------gttctggttctttatgccttgttattcttg------aatttttgttttatgtgaagcctattttatagttttgtt----cataatagattgttcatttgacagGAGATGGGGCCTGGACCATCGAACCAATCTGGTTTGAGATTTATTAGTGGGATTATTTGCAAGTCCAAAGCTCTTAGATTTGAGAGGATGTTATTTCGTG
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gttccttgtaacatctcttattacttttgatctttttctgctataaaaactgtaaattctgttacaagttttttattttttttcaattttatcttgtaatgtaagtgaaccgttataaatggtttattttacagGAAATGAGGCATGCACCATCAGATCAATCTGGTTTAAGATTTATCAGTGGGATAATTTGTAAATCCAAAGTTCTTAGGTTTGAAAGGATGTTGTTTCGTG
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G04970.1 (Glycine max), 3'ss of exon 5
----gttctgg--ttctttatgccttgttattcttgaat-ttttgttt----tatgtgaagcctattttat--agt--tttgttcataatagattgttcatttgacagGAGATGGGGCCTGGACCATCGAACCAATCTGGTTTGAGATTTATTAGTGGGATTATTTGCAAGTCCAAAGCTCTTAGATTTGAGAGGATGTTATTTCGTG
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gtttgttgtagcatcctttatcacccttcataagtgcatatactgttactagtatctaaaatttatttcatccagtaagtgcactattctaaattgtgtatattacagGAAATGAGGCCTCAGTCATCAAACTCGTCTGGTTTAAGATTTATCAGTGGGATTATTTGTAAATCCAAGGTTCTTAGGTTTGAAAGGATGTTGTTTCGTG
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA13G40430.1 (Glycine max), 3'ss of exon 5
----gttctgg--ttctttatgccttgttattcttgaat-ttttgttt----tatgtgaagcctattttat--agt--tttgttcataatagattgttcatttgacagGAGATGGGGCCTGGACCATCGAACCAATCTGGTTTGAGATTTATTAGTGGGATTATTTGCAAGTCCAAAGCTCTTAGATTTGAGAGGATGTTATTTCGTG
||| | | | |||||| | | || || || | |||| | | | || ||||| || ||| | || || |||||| || |||||||| ||| ||||| |||| ||| |||||||| |||||||| |||||||||||||| || ||||| | |||||| ||||| |||||||| |||||||
gtttgttgtagcatcctttatcacccttcataagtgcatatactgttactagtttttaaaatttatttcatccagtaagtgcactattctaaattgtttatatgacagGAAATGAGGCCTCAGTCATCAAACTCGTCTGGTTTAAGATTTATCAGTGGGATTATTTGTAAATCCAAGGTTCTTAGGTTTGAAAGGATGTTGTTTCGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttatgtgaagcctattttatagttttgttcataatagattgttcatttgacagGAGATGGGGCCTGGACCATCGAACCAATCTGGTTTGAGATTTATTAGTGGGATTATTTGCAAGTCCAAAGCTCTTAGATTTGAGAGGATGTTATTTCGTG
ttcattt CT-rich tract
tattttatagttttgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttctggttctttatgccttgttattcttgaatttttgttttatgtgaagcctattttatagttttgttcataatagattgttcatttgacagGAGATGGGGCCTGGACCATCGAACCAATCTGGTTTGAGATTTATTAGTGGGATTATTTGCAAGTCCAAAGCTCTTAGATTTGAGAGGATGTTATTTCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG