1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ctatcgtgtggcaaatgttgagggttccagtgattgttcatatgagttcattttctagttgatggaaattatcttacaatggatcttcttaaacctgcagGATCTGAAGAAAAAGCCCAAGTACTTGGTGGTATTTACAGTTGGTCTTGATCAACGGAAAAATATTGATGAATCAGTTAAAAAG
species | Vitis vinifera |
transcript | Vv06s0004g02700.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGGTCTGCCCAGTGAG GATCTGAAGAAAAAGCCCAAGTACTTGGTGGTATTTACAGTTGGTCTTGATEST: gi|161717256|gb|FC067262.1|FC067262
genomic: GGGGTCTGCCCAGTGAGgtatgttcta ... aaacctgcagGATCTGAAGAAAAAGCCCAAGTACTTGGTGGTATTTACAGTTGGTCTTGAT
EST: TATCAGAATCTGATTTTTATTTGCGCAGATTATGGGGTCTGCCCAGTGAG GATCTGAAGAAAAAGCCCAAGTACTTGGTGGTATTTACAGTTGGTCTTGATEST: gi|110687082|gb|EE064179.1|EE064179
genomic: TATCAGAATCTGATTTTTATTTGCGCAGATTATGGGGTCTGCCCAGTGAGgtatgttcta ... aaacctgcagGATCTGAAGAAAAAGCCCAAGTACTTGGTGGTATTTACAGTTGGTCTTGAT
EST: TATCAGAATCTGATTTTTATTTGCGCAGATTATGGGGTCTGCCCAGTGAG GATCTGAAGAAAAAGCCCAAGTACTTGGTGGTATTTACAGTTGGTCTTGAT
genomic: TATCAGAATCTGATTTTTATTTGCGCAGATTATGGGGTCTGCCCAGTGAGgtatgttcta ... aaacctgcagGATCTGAAGAAAAAGCCCAAGTACTTGGTGGTATTTACAGTTGGTCTTGAT
gttcattttctagttgatggaaattatcttacaatggatcttcttaaacctgcagGATCTGAAGAAAAAGCCCAAGTACTTGGTGGTATTTACAGTTGGTCTTGATCAACGGAAAAATATTGATGAATCAGTTAAAAAG
atcttac putative branch site (score: 3)
tcttctta putative PPT
aaattatcttacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatcgtgtggcaaatgttgagggttccagtgattgttcatatgagttcattttctagttgatggaaattatcttacaatggatcttcttaaacctgcagGATCTGAAGAAAAAGCCCAAGTACTTGGTGGTATTTACAGTTGGTCTTGATCAACGGAAAAATATTGATGAATCAGTTAAAAAG
- - - - - gcaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgga