Sequence
atgc intronic sequence ATGC exonic sequence...tcttattttcttgagtgagcaagcaaatatcttctcatgttagtaaaacagtaatatcttcttgtgttagtaaaacagtaatgtaaaaaatactgaacagGCAGGTCTATCAGCAGCTGATGTGGAAATAGCAGATTGGCTACGTAAAAATTACTCAAACAAGTGTATTGTTCTTGCTGTGAACAAGTGTGAATCTCCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02070.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G302233_T01 (Zea mays), 3'ss of exon 4
--------------------------------------------------------------------------------------tcttat---tttcttgagtgagcaagcaaatatcttctcatgttagtaaaacagtaatatcttcttgtgttagtaaaacagtaatgtaaaaaatactgaacagGCAGGTCTATCAGCAGCTGATGTGGAAATAGCAGATTGGCTACGTAAAAATTACTCAAACAAGTGTATTGTTCTTGCTGTGAACAAGTGTGAATCTCCAA
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gcaggtttaggaaattatctttcttttctgctcatggaagtgctggtttaatatttgaattcacaacaaccttaaatatatgtacttctaatgctttccttgaacatttttgaccagaaattgttgttctataatttctcatttaagttccttttttactagtataatggtgtcaaca-tattt--cagGCTGGTCTTGTGGCAGCTGATATAGAGATTTCTGATTGGTTACGACGCAACTACTCTGACAAGTGTATTCTACTTGCTGTCAATAAGTGTGAATCTCCAC
upper sequence: Vv06s0004g02070.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G14170.1 (Glycine max), 3'ss of exon 1
----tcttattttcttgagtgagcaagcaa-atatcttctcatgtta-gtaaaacagtaatatcttcttgtgttagtaaaacagtaatgtaaaaaatactgaacagGCAGGTCTATCAGCAGCTGATGTGGAAATAGCAGATTGGCTACGTAAAAATTACTCAAACAAGTGTATTGTTCTTGCTGTGAACAAGTGTGAATCTCCAA
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gaagttttttttactctattttaaaagcaagatatgatcgactgtttcataaagctg------ctccaaacgaaccgaagacagtaatggctattatgttgaacagGCAGGTCTAACAGCAGCTGATGAGGAGATTGCTGATTGGCTACGTAAAAAATACTCAGATAAATATGTCATTCTTGCAGTTAACAAGTGTGAATCTCCAC
upper sequence: Vv06s0004g02070.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G06150.1 (Glycine max), 3'ss of exon 4
tcttattttcttgagtgagcaagcaaa-tatcttctc-atgttagtaaaacagtaatatcttcttgtgttagtaaaacagtaatgtaaaaaatactgaacagGCAGGTCTATCAGCAGCTGATGTGGAAATAGCAGATTGGCTACGTAAAAATTACTCAAACAAGTGTATTGTTCTTGCTGTGAACAAGTGTGAATCTCCAA
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--tttctttacactgtcaatgtgtatactatttactctattttaaatcaaaataagctgctccaaatgacctgaagacagtaatgactattatgttgagcagGCCGGTCTAACAGCAGCAGACGAGGAAATTGCTGATTGGCTACGTAAAAACTACTCAGATAAATATGTCATTCTTGCAGTTAACAAGTGTGAATCTCCAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaacagtaatatcttcttgtgttagtaaaacagtaatgtaaaaaatactgaacagGCAGGTCTATCAGCAGCTGATGTGGAAATAGCAGATTGGCTACGTAAAAATTACTCAAACAAGTGTATTGTTCTTGCTGTGAACAAGTGTGAATCTCCAA
taaaacagtaatgtaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcttattttcttgagtgagcaagcaaatatcttctcatgttagtaaaacagtaatatcttcttgtgttagtaaaacagtaatgtaaaaaatactgaacagGCAGGTCTATCAGCAGCTGATGTGGAAATAGCAGATTGGCTACGTAAAAATTACTCAAACAAGTGTATTGTTCTTGCTGTGAACAAGTGTGAATCTCCAA
- - - - - - - - - gcaagca
- - - - - - - - - - - - - - - - -ctcatgt
- - - - - - - - - - - - - - - - - - - - - gtaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaa