Sequence
atgc intronic sequence ATGC exonic sequencegtaagggacagatctccacccaagaacttgtagtcattaattaaaaataccttaccttacaaacctgttattagttattaattaatctctttttggaaatgaatttcagGAAGAGTAGTGGGTTTTCTAGAGGTGCATCAATGTATCGTGGAGTTACAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01800.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G06010.1 (Glycine max), 3'ss of exon 6
gtaagggacagatctccacccaa-gaacttgtagtcattaattaaaaataccttaccttacaaacctgttattagttattaattaatctctttttggaaatgaatttcagGAAGAGTAGTGGGTTTTCTAGAGGTGCATCAATGTATCGTGGAGTTACAAG
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------gttggagcttattttgataagtttctacttgatacacttcaataagtt---ttgtagatcactt-tcaaatgtttgttaaacatagtgtggtgatgatttgcagGAAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGTGGAGTTACAAG
upper sequence: Vv06s0004g01800.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G14040.2 (Glycine max), 3'ss of exon 7
gtaagggacagatctccacccaagaacttgtagtcattaattaaaaatacct-taccttacaaacctgttattagttattaattaatctctttttggaaatgaatttcagGAAGAGTAGTGGGTTTTCTAGAGGTGCATCAATGTATCGTGGAGTTACAAG
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----------atacttgttataataagttaagattatatactatacacttcaataagttttgtagaacacttcaaatgtttgttaaacatattgcggtaataatttgcagGAAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGTGGAGTTACAAG
upper sequence: Vv06s0004g01800.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G20840.1 (Arabidopsis thaliana), 3'ss of exon 6
gtaagggacagatctccacccaagaacttgtagtcattaattaaaaataccttaccttacaaacctgttattagttattaattaatctctttttggaaatgaatttcagGAAGAGTAGTGGGTTTTCTAGAGGTGCATCAATGTATCGTGGAGTTACAAG
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-----------gttttgttttgtgttttcccatgaggcattttcaaataaattg------aaacttatc-taatctaacaacttatatattcgt-----caaatcacagGAAAAGTAGTGGATTTTCGAGAGGCGCTTCGATGTATCGAGGAGTTACAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccttacaaacctgttattagttattaattaatctctttttggaaatgaatttcagGAAGAGTAGTGGGTTTTCTAGAGGTGCATCAATGTATCGTGGAGTTACAAG
tgttattagttattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagggacagatctccacccaagaacttgtagtcattaattaaaaataccttaccttacaaacctgttattagttattaattaatctctttttggaaatgaatttcagGAAGAGTAGTGGGTTTTCTAGAGGTGCATCAATGTATCGTGGAGTTACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG