Sequence
atgc intronic sequence ATGC exonic sequence...tgattaattaattgtataacttctgtttgaaaatttgaatgtgtaattcatcaaagaaaaaaaaagttgaaattctatttgttctataattgtgtgccagGCAATAGGGACATTCTTCATGGACATTGTTAACTCCTCTCATAGCTATGCAACCGGAGGGACATCAGTTGGAGAGTTCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os06g41020.1 (Oryza sativa), 3'ss of exon 5
---tgattaattaattgtataacttctgtttgaaaatttgaatg--tgtaattcatcaaagaaaaaaaaagttgaaatt--ctatttgttctataattgtgtgccagGCAATAGGGACATTCTTCATGGACATTGTTAACTCCTCTCATAGCTATGCAACCGGAGGGACATCAGTTGGAGAGTTCTG
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cagtgtgtgctttcttgcaaa-----taattgtacacttcaatacttgtggtgaaacttgaatgaatcttggtgcatctgaccataagtcctat--ttatgaaacagGAGATTGCAACATTCTTCATGGACATAGTTAATTCTTCTCATAGCTATGCCACTGGTGGCACATCTGTCAGTGAGTTCTG
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G14020.1 (Glycine max), 3'ss of exon 5
tgattaatta-attgtataacttctgtttgaaaatttgaatgtgtaattcatcaaagaaaaaaaaagttgaaattctatttgttctataattgtgtgccagGCAATAGGGACATTCTTCATGGACATTGTTAACTCCTCTCATAGCTATGCAACCGGAGGGACATCAGTTGGAGAGTTCTG
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tgtatatttgtattggaagtaatcattaagcccagcacaacttaatatttgtcatgcctttcaaatttctgagatttgttcgtgtt-tattggtgttttagCAAATTGGGACATTCTTTATGGACCTCGTAAACTCTTCTCACAGCTATGCAACTGGAGGGACATCAGTCAGCGAGTTCTG
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G05980.1 (Glycine max), 3'ss of exon 5
tgattaattaattgtataacttctgtttgaaa--atttgaatgtgtaattcatcaaagaaaaaaaaagttgaaattctatttgttctataattgtgtgccagGCAATAGGGACATTCTTCATGGACATTGTTAACTCCTCTCATAGCTATGCAACCGGAGGGACATCAGTTGGAGAGTTCTG
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-tgtagatttgtgttggaagtaatcattaagcccagcacaacttaatatttgtcat-gcctttcaactttctgagactttttcttgtttattggtcttttagCAAATTGGGACATTCTTTATGGACCTCGTAAACTCTTCTCACAGCTACGCAACTGGAGGGACATCAGTCAGAGAGTTCTG
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA12G05970.1 (Glycine max), 3'ss of exon 8
tgattaattaattgtataacttctgtttgaaaatttgaatgtgtaattcatcaaagaaaaaaaaagttgaaattctatttgttctataattgtgtgccagGCAATAGGGACATTCTTCATGGACATTGTTAACTCCTCTCATAGCTATGCAACCGGAGGGACATCAGTTGGAGAGTTCTG
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---------------gtatcattgtatagcccagcacaacatagcatttatcatgcctttcaactttcggagACCTGT--GCTTGTTTATTG-GTGTTATGAAATTGAGACATTTTTTATGGACATCGTAAACTCTTCTCACAGCTATGCAACAGGAGGGACATCAGTCGGCGAG-----
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G03770.1 (Glycine max), 3'ss of exon 5
-tgattaattaattgtataacttctgtt-tgaaaatttgaatgtgtaatt--catcaaagaaaaaaaaagttgaaattctatttgttctataattgtgtgccagGCAATAGGGACATTCTTCATGGACATTGTTAACTCCTCTCATAGCTATGCAACCGGAGGGACATCAGTTGGAGAGTTCTG
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gtgaattgctttatgtatgctgtagattactggtactgaaatttgttgttattattttaaattccgataatggttcttgaatttggtttttg---gtgtgttagGAAATAGGAACACTCTTTATGGATCTTGTTAACTCTTCTCATACTTATGCAACTGGAGGGACATCAGTCAACGAATTTTG
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA11G14000.1 (Glycine max), 3'ss of exon 6
tgattaattaattgtataacttctgtttgaaa-atttgaatgtgtaattcatcaaagaaaaaaaaagttgaaattctatttgttctataattgtgtgccagGCAATAGGGACATTCTTCATGGACATTGTTAACTCCTCTCATAGCTATGCAACCGGAGGGACATCAGTTGGAGAGTTCTG
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ttattgtgtatttttggtatcattgtatagcccagtacaacataacatttgtcat-gcctttcaactttctgacattttttcttgtttattggtgttttagCAAATTGGGACATTCTTTATGGACCTCGTAAACTCTTCTCACAGTTATGCAACTGGAGGGACATCA--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161721828|gb|FC070507.1|FC070507EST: TTATTGGATCCCAAATGCGGTATGAAGTCACTGGTGATCCACTTTACAAG GCAATAGGGACATTCTTCATGGACATTGTTAACTCCTCTCATAGCTATG
genomic: TTATTGGATCCCAAATGCGGTATGAAGTCACTGGTGATCCACTTTACAAGgtgagttgct ... tgtgtgccagGCAATAGGGACATTCTTCATGGACATTGTTAACTCCTCTCATAGCTATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attcatcaaagaaaaaaaaagttgaaattctatttgttctataattgtgtgccagGCAATAGGGACATTCTTCATGGACATTGTTAACTCCTCTCATAGCTATGCAACCGGAGGGACATCAGTTGGAGAGTTCTG
aaaaaaaaagttgaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgattaattaattgtataacttctgtttgaaaatttgaatgtgtaattcatcaaagaaaaaaaaagttgaaattctatttgttctataattgtgtgccagGCAATAGGGACATTCTTCATGGACATTGTTAACTCCTCTCATAGCTATGCAACCGGAGGGACATCAGTTGGAGAGTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - -cttctgt
- - - - - - - - - - - - - - gaaaatt
- - - - - - - - - - - - - - - - - - gaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - -caaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa