Sequence
atgc intronic sequence ATGC exonic sequencegtagtacttgtgcttctgctaaacttacaatgcatttaatgtctatgtccttatgtgatgatgtaattctctctcttgttcctttataatcagttgtttactagttttgttgcatgattttctgaggaatatgttgacagATATTACTTAGTGGAGAAGGCAAAGGATTCTAATATTATTGGGCTTTTGGTGGGAACTCTTGGTGTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0094g00370.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os11g16430.1 (Oryza sativa), 3'ss of exon 5
gtagtacttgtgcttctgctaaacttacaatgcatttaatgtctatgtccttatgtgatg-atgtaattctctctcttgttcctttataatcagttgtttactagtt-ttgttgcatgattttctgaggaatatgttga--cagATATTACTTAGTGGAGAAGGCAAAGGATTCTAATATTATTGGGCTTTTGGTGGGAACTCTTGGTGTAG
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--------------------------------------------gtcatcttatgcagcatatataatactttatttttgcgtgaaatgaaagattttttttttgtcattgtagcattatttacaaaatagtttgtatatgcagATATTACCTTGTGGAGAAGGCGAAGGATGCAAATATTGTTGGCATTTTGGTGGGGACCCTGGGTGTTG
upper sequence: Vv05s0094g00370.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AC217358.3_FGT003 (Zea mays), 3'ss of exon 5
gtagtacttgtgcttctgctaaacttacaatgcatttaatgtctatgtccttatgtgatgatgtaattc-tctctcttgttcctttataatcagttgtttactagttttgttgc--atgattttctgaggaatatgttgacagATATTACTTAGTGGAGAAGGCAAAGGATTCTAATATTATTGGGCTTTTGGTGGGAACTCTTGGTGTAG
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--------------------------------------------------------------gtattttgtttttgcagcatcgatatact-attttcttactatatttggtgttgattacaaaatatgaattgtaattgtagATATTACCTCGTGGAGAAGGCGAAGGATGCAAATATTATTGGCATTTTGGTGGGAACTCTGGGTGTAG
upper sequence: Vv05s0094g00370.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA15G01090.1 (Glycine max), 3'ss of exon 5
gtagtacttgtgcttctgctaaacttacaatgcatttaatgtctatgtccttatgtgatgatgtaattctctctcttgttcctttataatcagttgtttactagttttgttgcatgattttctgaggaatatgttgacagATATTACTTAGTGGAGAAGGCAAAGGATTCTAATATTATTGGGCTTTTGGTGGGAACTCTTGGTGTAG
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------------------------------------------gtatgtaaacacaatataa-acacactactctgttgtg--taagccatcttatgtcttcaaaatttact--aagctagggtgatgactatg----cagATATTACCTGGTGGAGAGAGCTAAAGATGCTAATATTGTTGGGATTTTAGTTGGAACTCTTGGTGTTG
upper sequence: Vv05s0094g00370.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G59630.1 (Arabidopsis thaliana), 3'ss of exon 5
gtagtacttgtgcttctgctaaacttacaatgcat-ttaatgtctatgtccttatgtgatgatgtaattctctctcttgttcctttataatcagttgtttactagttttgttgcatgattttctgaggaatatgttgacagATATTACTTAGTGGAGAAGGCAAAGGATTCTAATATTATTGGGCTTTTGGTGGGAACTCTTGGTGTAG
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---gtataatcacttttttcaagcagacattatacatcacaatatgaaactttgtcaatcatttcgatcttctttattatctctgttgaatta--cattt-caagtcct---------cattcagagttatgtgttg-cagATATTACTTGGTGGAAAAAGCTAAGGATGCGAATATTATAGGTATTTTGGTGGGGACTCTTGGTGTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataatcagttgtttactagttttgttgcatgattttctgaggaatatgttgacagATATTACTTAGTGGAGAAGGCAAAGGATTCTAATATTATTGGGCTTTTGGTGGGAACTCTTGGTGTAG
atgatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagtacttgtgcttctgctaaacttacaatgcatttaatgtctatgtccttatgtgatgatgtaattctctctcttgttcctttataatcagttgtttactagttttgttgcatgattttctgaggaatatgttgacagATATTACTTAGTGGAGAAGGCAAAGGATTCTAATATTATTGGGCTTTTGGTGGGAACTCTTGGTGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG