1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gatatatattctgcatattttccatcattttacatttattctccagttgaaatctttgaaaaaattgtaggttttggcttaaaagctctctgttttctagGAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACGTCCTGTATGGCGTCCTCCATGGAGAAATTACAGG
species | Vitis vinifera |
transcript | Vv05s0077g02310.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAG GAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACGEST: gi|352773658|gb|FQ472440.1|FQ472440
genomic: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGgttcttgatg ... tgttttctagGAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
EST: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCGTCTGGGCCATCTGAAAG GAACCTATCAACTEST: gi|30125771|gb|CB911110.1|CB911110
genomic: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGgttcttgatg ... tgttttctagGAACCTATCAACT
EST: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAG GAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACGEST: gi|352785394|gb|FQ477608.1|FQ477608
genomic: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGgttcttgatg ... tgttttctagGAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
EST: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAG GAGCCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACGEST: gi|110688178|gb|EE066434.1|EE066434
genomic: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGgttcttgatg ... tgttttctagGAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
EST: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAG GAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACGEST: gi|22010813|gb|BQ795847.1|BQ795847
genomic: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGgttcttgatg ... tgttttctagGAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
EST: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAG GAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACGEST: gi|71858909|gb|DT007964.1|DT007964
genomic: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGgttcttgatg ... tgttttctagGAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
EST: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAG GAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACGEST: gi|110728878|gb|EE104832.1|EE104832
genomic: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGgttcttgatg ... tgttttctagGAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
EST: CATCTGGGTAAAAGCACTGCAGTTATTTCCTCTTCTGGGCCATCTGAAAG GAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACGEST: gi|110711785|gb|EE088658.1|EE088658
genomic: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGgttcttgatg ... tgttttctagGAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
EST: CATCTGGGTAAAAGCACTGCAGTTATTTCCTCTTCTGGGCCATCTGAAAG GAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
genomic: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGgttcttgatg ... tgttttctagGAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
gttgaaatctttgaaaaaattgtaggttttggcttaaaagctctctgttttctagGAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACGTCCTGTATGGCGTCCTCCATGGAGAAATTACAGG
ctctctgttttct CT-rich tract
aatctttgaaaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatatatattctgcatattttccatcattttacatttattctccagttgaaatctttgaaaaaattgtaggttttggcttaaaagctctctgttttctagGAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACGTCCTGTATGGCGTCCTCCATGGAGAAATTACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - ctgcata
- - - - - - - - - - -ccatcat
- - - - - - - - - - - - - - - - - - - ttctcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agctctc