Sequence
atgc intronic sequence ATGC exonic sequencegttgttgctttgatcattgcattgtttaggattcaagcattgcatcccgtctctccctccttccctaaattttactttgtggttgtctgtagcagtttttaaaccttttgaaattgcagGTGAAGCCGGCACTTCCAGCCCTGGAGCGTCTTGTTCATTCCAGCGATGAAGAAGTTCTGACAGATGCATGTTGGGCACTCTCATATCTCTCTGATGGTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G03430.1 (Glycine max), 3'ss of exon 5
gttgttgctttgatcattgcattgtttaggattcaagcattgcatcccgtctctccctccttccctaaattt-tactttgtggttgtctgtagcagtttttaaacc--ttttgaaattgcagGTGAAGCCGGCACTTCCAGCCCTGGAGCGTCTTGTTCATTCCAGCGATGAAGAAGTTCTGACAGATGCATGTTGGGCACTCTCATATCTCTCTGATGGTA
| | ||| | ||| |||| || || | || | | | || | | || || | ||||||| |||||||||||||| || |||||| | ||| ||||| |||||||||||| |||||||||| || |||||| | ||||||||||||||||| |
-----------------------------------------gtaatatctcttaaattggttcattaaacttgcgagacagtgtcttttggcgtattcttattgctaatatttaattgacagGTGAGACCGGCACTTCCAGCACTCGAGCGTTTGGTTTTTTCCAATGATGAAGAAGTTTTGACAGATGCTTGCTGGGCATTATCATATCTCTCTGATGGCA
upper sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G37180.1 (Glycine max), 3'ss of exon 6
gttgttgctttgatcattgcattgtttaggattcaagcattgcatcccgtctctccctccttccctaaatttt----actttgtggttgtctgtagcagtttttaaaccttttgaaattgcagGTGAAGCCGGCACTTCCAGCCCTGGAGCGTCTTGTTCATTCCAGCGATGAAGAAGTTCTGACAGATGCATGTTGGGCACTCTCATATCTCTCTGATGGTA
| || || ||| | ||| ||||| ||| ||| | | | | | | || ||| |||| || | ||||||| || |||||||| || || |||||| | ||| ||||| |||||||||||| |||||||||| || |||||| | ||||||||||||||||| |
---------------------------------gtaatatcatttcatctcttaaattggttcactaaacttttgagactgtcttttggcatattcttattgctaatattttt-aattgacagGTGAGACCAGCACTTCCTGCACTCGAGCGTTTGGTTTTTTCCAATGATGAAGAAGTTTTGACAGATGCTTGCTGGGCATTATCATATCTCTCTGATGGCA
upper sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA09G04430.1 (Glycine max), 3'ss of exon 5
gttgttgctttgatcattgcattgtttaggattcaagcattgcatcccgtctctccctccttccctaaattttactttgtggttgtctgtagcagtttttaaacct-----tttgaaattgcagGTGAAGCCGGCACTTCCAGCCCTGGAGCGTCTTGTTCATTCCAGCGATGAAGAAGTTCTGACAGATGCATGTTGGGCACTCTCATATCTCTCTGATGGTA
| | | || | || | || | | ||| || | | || | ||| | ||||||| | | || ||||| || || || || | ||| ||||| ||||||||||| ||||||| |||||||||||||| |||||||| || ||||| |
-----------------------------------------gtaattggcctttttggttaattgaaatcaatcctgtaagagaacttgtttaggtatattaatatgggtattttgatggacagGTGAGGGCAGCGCTTCCTGCTCTAGAACGATTGGTTTTTTCCAATGATGAAGAAGTCTTGACAGACGCATGTTGGGCACTATCATATCTTTCCGATGGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctaaattttactttgtggttgtctgtagcagtttttaaaccttttgaaattgcagGTGAAGCCGGCACTTCCAGCCCTGGAGCGTCTTGTTCATTCCAGCGATGAAGAAGTTCTGACAGATGCATGTTGGGCACTCTCATATCTCTCTGATGGTA
ccctaaa putative branch site (score: 3)
ccttttg putative PPT
tttttaaacctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgttgctttgatcattgcattgtttaggattcaagcattgcatcccgtctctccctccttccctaaattttactttgtggttgtctgtagcagtttttaaaccttttgaaattgcagGTGAAGCCGGCACTTCCAGCCCTGGAGCGTCTTGTTCATTCCAGCGATGAAGAAGTTCTGACAGATGCATGTTGGGCACTCTCATATCTCTCTGATGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG