1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtattaaatggaacaccaatacaatcccaacctatctcgatctgttctacagtttatgatgagttgattgtttatgtaatcaaatcaaaccgacaatctgcagAGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTC
species | Vitis vinifera |
transcript | Vv05s0077g01290.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAG AGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCEST: gi|110700463|gb|EE078531.1|EE078531
genomic: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAGgtattaaatg ... caatctgcagAGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
EST: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAATTACAG AGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCEST: gi|110400864|gb|EC967446.1|EC967446
genomic: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAGgtattaaatg ... caatctgcagAGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
EST: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAG AGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCEST: gi|110381493|gb|EC934610.1|EC934610
genomic: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAGgtattaaatg ... caatctgcagAGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
EST: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAG AGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCEST: gi|110373187|gb|EC937404.1|EC937404
genomic: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAGgtattaaatg ... caatctgcagAGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
EST: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAG AGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCEST: gi|110397101|gb|EC962822.1|EC962822
genomic: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAGgtattaaatg ... caatctgcagAGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
EST: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAATTACAG AGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCEST: gi|77579368|gb|DV218513.1|DV218513
genomic: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAGgtattaaatg ... caatctgcagAGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
EST: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAG AGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
genomic: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAGgtattaaatg ... caatctgcagAGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
acagtttatgatgagttgattgtttatgtaatcaaatcaaaccgacaatctgcagAGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTC
agttgat putative branch site (score: 5)
tttatgtaatcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattaaatggaacaccaatacaatcccaacctatctcgatctgttctacagtttatgatgagttgattgtttatgtaatcaaatcaaaccgacaatctgcagAGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGCCGTGATAGCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA