Sequence
atgc intronic sequence ATGC exonic sequence...catgggtgtaaccattaaacatgaatttgtttagtgataatatttggctactgatttaggtaatttctctttatcattatcattgtgtgtgtgtttgcagAGTTACAACCGGGATCTCTTTATATTTCTCTACTTCCTTCTTATCATAGTTTCAGCAGTGACTTCCTTCAAGGTCCATCATGATAAGTCATCATTCTCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0077g00620.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G020721_T01 (Zea mays), 3'ss of exon 5
----------------------------------------------------------------------------------------------catgggtgtaaccattaaaca-tgaatttgtttagtg--ataatatttggc-tactgatttaggtaatttctctttatcattatcattgtgtgtgtgtttgcagAGTTACAACCGGGATCTCTTTATATTTCTCTACTTCCTTCTTATCATAGTTTCAGCAGTGACTTCCTTCAAGGTCCATCATGATAAGTCATCATTCTCTG
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gtactgttgtgcagatattgttacagagtctggtcatatgcctttgtgtaaaattgccatttattagaacctttcaaattttctgaagtattcagattgatgaaaaaatatcccagtgcattcttcatgtgccattatatatagtgtaacactttaatccactaaccttt----ttattggtatgctt-catctgcagAATTACAGCCGAGATCTGTTCCTTTTCCTCTACTTTCTTCTTATCATTGTAGCAGCTATGACTTCCTTTAAGGTCCATCAAGACAAGTCATCATTCACAG
upper sequence: Vv05s0077g00620.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA17G04070.1 (Glycine max), 3'ss of exon 5
----catgggtgtaaccattaaacatgaatttgttta-gtgataatatttggctactgatttaggtaatttctctttatcattatcattgtgtgtgtgtttgcagAGTTACAACCGGGATCTCTTTATATTTCTCTACTTCCTTCTTATCATAGTTTCAGCAGTGACTTCCTTCAAGGTCCATCATGATAAGTCATCATTCTCTG
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tttttgtttctgaagccattg--cttcctttaacatacgtcatgacaagtcacctatgaat-aagtgatataatatt-ttgtcaacaat-catctgtttttgcagAGTTACAATAGGGATCTTTTCCTATTTCTCTATTTTCTCCTCATCATAGTTTCAGCAATGACTTCCTTTAAGATACATCATGACAAGTCACCATTGTCTG
upper sequence: Vv05s0077g00620.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GLYMA07G36550.1 (Glycine max), 3'ss of exon 5
catgggtgtaaccattaaacatgaatttgtttagtgataatatttggctactgatt-taggtaatttctctttatcattatcattgt-gtgtgtgtttgcagAGTTACAACCGGGATCTCTTTATATTTCTCTACTTCCTTCTTATCATAGTTTCAGCAGTGACTTCCTTCAAGGTCCATCATGATAAGTCATCATTCTCTG
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-atccgtgaaagcagtga-tatatctttgaaaaattagctttgtcatgtgcttactatgaataagttatataatattttgtcaacatcatctgcttttgcagAGTTACAATAGGGATCTCTTCCTATTTCTCTATTTTCTCCTCATCATAGTTTCGGCAATGACTTCCTTTAAGATACATCATGACAAGTCACCATTGTCTG
upper sequence: Vv05s0077g00620.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: AT3G06550.3 (Arabidopsis thaliana), 3'ss of exon 5
catgggtgtaaccattaaacatgaatttgtttagtgataatatttggctactgatttaggtaatttctctttatcattatcattgtgtgtgtgtt--tgcagAGTTACAACCGGGATCTCTTTATATTTCTCTACTTCCTTCTTATCATAGTTTCAGCAGTGACTTCCTTCAAGGTCCATCATGATAAGTCATCATTCTCTG
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-gtaaatttgataagtcatgatggatat-cctgcttgtgtcggttcattcgtatgtgcttctatgtgtctcagtagcttacattgttaatcttttgacacagAGTTACAACCGGGATCTCTTTCTGTTCCTTTACTTCCTTCTCATCATCGTTTCAGCGATAACTTCATTCACGATACATACTGATAAATCACCATTCAGCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690927|gb|EC963161.1|EC963161EST: CCTACTTTTACTTATGTGATCGTACAAATCTCTTTGGTGACTCCAAAAAG AGTTACAACCGGGATCTCTTTATATTTCTCTACTTCCTTCTTATCATAGTT
genomic: CCTACTTTTACTTATGTGATCGTACAAATCTCTTTGGTGACTCCAAAAAGgtgcaattga ... gtgtttgcagAGTTACAACCGGGATCTCTTTATATTTCTCTACTTCCTTCTTATCATAGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggctactgatttaggtaatttctctttatcattatcattgtgtgtgtgtttgcagAGTTACAACCGGGATCTCTTTATATTTCTCTACTTCCTTCTTATCATAGTTTCAGCAGTGACTTCCTTCAAGGTCCATCATGATAAGTCATCATTCTCTG
tactgat putative branch site (score: 2)
tttatcattatcatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catgggtgtaaccattaaacatgaatttgtttagtgataatatttggctactgatttaggtaatttctctttatcattatcattgtgtgtgtgtttgcagAGTTACAACCGGGATCTCTTTATATTTCTCTACTTCCTTCTTATCATAGTTTCAGCAGTGACTTCCTTCAAGGTCCATCATGATAAGTCATCATTCTCTG
catgggt
- - - -gtaacca
- - - - - - - - - -catgaat
- - - - - - - - - - - - - - - - - - - - - - - -ctactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt