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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagactagataacctctatctattggtgtaatattttgctttctcgaaaacatgctttttcttgactgggcatgatgaatatgtttgatctgactagGTGTTTGAGACCAAATCAAGCCGGAGGATGTTTACGCTTATTGCATCGTTTGTGGTCATTTTCCTAGTCATATACTACCTGACTAGGTAAATGATACACT

Basic information

species Vitis vinifera
transcript Vv05s0051g00940.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0051g00940.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os02g57510.4 (Oryza sativa), 3'ss of exon 5
gtaagtagactagataacctctatctattggtgtaatattttgctttctcgaaaacatgctttttcttgactggg--catgatgaatatgtttgatctgactagGTGTTTGAGACCAAATCAAGCCGGAGGATGTTTACGCTTATTGCATCGTTTGTGGTCATTTTCCTAGTCATATACTACCTGACTAGGTAAATGATACACT
            |  |||    |   |     |||  || || ||| |   | | ||| | | |  |   ||| |  |   ||  || | |  ||| |    |||| ||||||||||||||||| |||||||||   || ||  | ||||| || || |   |||| ||  |  |||||||| |||| ||||| | ||    | 
------------gtaaacactcacaca-----gtacaatcttccttccatcataccatccgtatattctgctgagaccgcaattgatgtctacgatat----agGTTTTTGAGACCAAATCAAGTCGGAGGATGGGAACCCTCGTAGCATCATTCGTTGCGCTTTTTCTGCTGGTATACTACTTGACCAGGTAGAAGAGGACCA

upper sequence: Vv05s0051g00940.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G101571_T02 (Zea mays), 3'ss of exon 5
gtaagtagactagataacctctatctattggtgtaatattttgctttctcgaaaacatgctttttcttgactgggcatgatgaatatgtttgatctgactagGTGTTTGAGACCAAATCAAGCCGGAGGATGTTTACGCTTATTGCATCGTTTGTGGTCATTTTCCTAGTCATATACTACCTGACTAGGTAAATGATACACT
                      | | |   | | || | ||   ||       |  | ||        || || ||       | ||| |  || ||   |||| |||||||||||||||||||||||||||   || ||  | ||||| || || | | |||| ||  |  | |||||| |||| ||||| | || |    
-------------------gtaagcgacaagagaaacaattaaatt-------agtaggcc-------gattgtgcccttctgagatgatccatgtgtgcagGTATTTGAGACCAAATCAAGCCGGAGGATGGGAACCCTCGTCGCATCATTCGTCGCCCTTTTTCTGCTGGTTTACTACTTGACCAGGTAGAAGACATGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22008454|gb|BQ793488.1|BQ793488
EST:     TGGATGCATCAAGGGGAATCCTCTCAGGAACCATGGAACGGTTCAAGATG                         GTGTTTGAGACCAAATCAAGCCGGAGGATGTTTACGCTTATTGCATCGTTT
genomic: TGGATGCATCAAGGGGAATCCTCTCAGGAACCATGGAACGGTTCAAGATGgtaagtagac ... atctgactagGTGTTTGAGACCAAATCAAGCCGGAGGATGTTTACGCTTATTGCATCGTTT
EST: gi|110402034|gb|EC968667.1|EC968667
EST:     TGGATGCATCAAGGGGAATCCTCTCAGGAACCATGGAACGGTTCAAGATG                         GTGTTTGAGACCAAATCAAGCCGGAGGATGTTTACGCTTATTGCATCGTTT
genomic: TGGATGCATCAAGGGGAATCCTCTCAGGAACCATGGAACGGTTCAAGATGgtaagtagac ... atctgactagGTGTTTGAGACCAAATCAAGCCGGAGGATGTTTACGCTTATTGCATCGTTT
EST: gi|37183816|gb|CF603170.1|CF603170
EST:     TGGATGCATCAAGGGGAATCCTCTCAGGAACTATGGAACGGTTCAAGATG                         GTGTTTGAGACCAAATCAAGCCGGAGGATGTTTACGCTTATTGCATCGTTT
genomic: TGGATGCATCAAGGGGAATCCTCTCAGGAACCATGGAACGGTTCAAGATGgtaagtagac ... atctgactagGTGTTTGAGACCAAATCAAGCCGGAGGATGTTTACGCTTATTGCATCGTTT
EST: gi|30296527|gb|CB973321.1|CB973321
EST:     GGAACGGTTCAAGATG                         GTGTTTGAGACCAAATCAAGCCGGAGGATGTTTACGCTTATTGCATCGTTT
genomic: GGAACGGTTCAAGATGgtaagtagac ... atctgactagGTGTTTGAGACCAAATCAAGCCGGAGGATGTTTACGCTTATTGCATCGTTT
EST: gi|22009494|gb|BQ794528.1|BQ794528
EST:     TGGATGCATCAAGGGGAATCCTCTCAGGAACCATGGAACGGTTCAAGATG                         GTGTTTGAGACCAAATCAAGCCGGAGGATGTTTACGCTTATTGCATCGTTT
genomic: TGGATGCATCAAGGGGAATCCTCTCAGGAACCATGGAACGGTTCAAGATGgtaagtagac ... atctgactagGTGTTTGAGACCAAATCAAGCCGGAGGATGTTTACGCTTATTGCATCGTTT
EST: gi|46918094|gb|CN547423.1|CN547423
EST:     TGGATGCATCAAGGGGAATCCTCTCAGGAACCATGGAACGGTTCAAGATG                         GTGTTTGAGACCAAATCAAGCCGGAGGATGTTTACGCTTATTGCATCGTTT
genomic: TGGATGCATCAAGGGGAATCCTCTCAGGAACCATGGAACGGTTCAAGATGgtaagtagac ... atctgactagGTGTTTGAGACCAAATCAAGCCGGAGGATGTTTACGCTTATTGCATCGTTT
EST: gi|30127159|gb|CB912498.1|CB912498
EST:     TGGATGCATCAAGGGGAATCCTCTCAGGAACTATGGAACGGTTCAAGATG                         GTGTTTGAGACCAAATCAAGCCGGAGGATGTTTACGCTTATTGCATCGTTT
genomic: TGGATGCATCAAGGGGAATCCTCTCAGGAACCATGGAACGGTTCAAGATGgtaagtagac ... atctgactagGTGTTTGAGACCAAATCAAGCCGGAGGATGTTTACGCTTATTGCATCGTTT
EST: gi|110386397|gb|EC950990.1|EC950990
EST:     TGGATGCATCAAGGGGAATCCTCTCAGGAACCATGGAACGGTTCAAGATG                         GTGTTTGAGACCAAATCAAGCCGGAGGATGTTTACGCTTATTGCATCGTTT
genomic: TGGATGCATCAAGGGGAATCCTCTCAGGAACCATGGAACGGTTCAAGATGgtaagtagac ... atctgactagGTGTTTGAGACCAAATCAAGCCGGAGGATGTTTACGCTTATTGCATCGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcgaaaacatgctttttcttgactgggcatgatgaatatgtttgatctgactagGTGTTTGAGACCAAATCAAGCCGGAGGATGTTTACGCTTATTGCATCGTTTGTGGTCATTTTCCTAGTCATATACTACCTGACTAGGTAAATGATACACT
                                   aatatgttt  TA-rich tract