1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagcttcttttaatatatttacaaatattcttttcctgtgcattgaatttgattgaacatattttttttctccctttctgctcattgcagATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACA
species | Vitis vinifera |
transcript | Vv05s0049g01000.t01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCTGAAGAACTTGGAGTTGGACGGGATG ATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTAEST: gi|30251462|gb|CB969195.1|CB969195
genomic: GCTGAAGAACTTGGAGTTGGACGGGATGgtgagcttct ... ctcattgcagATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTA
EST: GCTGAAGGACTTGGAGTTGGACGGGATG ATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTAEST: gi|351019104|gb|FQ429264.1|FQ429264
genomic: GCTGAAGAACTTGGAGTTGGACGGGATGgtgagcttct ... ctcattgcagATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTA
EST: GCTGAAGAACTTGGAGTTGGACGGGATG ATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTAEST: gi|351043109|gb|FQ451282.1|FQ451282
genomic: GCTGAAGAACTTGGAGTTGGACGGGATGgtgagcttct ... ctcattgcagATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTA
EST: GCTGAAGAACTTGGAGTTGGACGGGATG ATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTAEST: gi|351026930|gb|FQ436583.1|FQ436583
genomic: GCTGAAGAACTTGGAGTTGGACGGGATGgtgagcttct ... ctcattgcagATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTA
EST: GCTGAAGAACTTGGAGTTGGACGGGATG ATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTAEST: gi|351026635|gb|FQ436288.1|FQ436288
genomic: GCTGAAGAACTTGGAGTTGGACGGGATGgtgagcttct ... ctcattgcagATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTA
EST: GCTGAAGAACTTGGAGTTGGACGGGATG ATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTAEST: gi|30325386|gb|CD008648.1|CD008648
genomic: GCTGAAGAACTTGGAGTTGGACGGGATGgtgagcttct ... ctcattgcagATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTA
EST: GCTGAAGAACTTGGAGTTGGACGGGATG ATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTAEST: gi|30327540|gb|CD010802.1|CD010802
genomic: GCTGAAGAACTTGGAGTTGGACGGGATGgtgagcttct ... ctcattgcagATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTA
EST: GCTGAAGAACTTGGAGTTGGACGGGATG ATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTAEST: gi|110364060|gb|EC927702.1|EC927702
genomic: GCTGAAGAACTTGGAGTTGGACGGGATGgtgagcttct ... ctcattgcagATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTA
EST: GCTGAAGAACTTGGAGTTGGACGGGATG ATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTAEST: gi|32269991|gb|CD719150.1|CD719150
genomic: GCTGAAGAACTTGGAGTTGGACGGGATGgtgagcttct ... ctcattgcagATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTA
EST: GCTGAAGAACTTGGAGTTGGACGGGATG ATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTAEST: gi|32269556|gb|CD718715.1|CD718715
genomic: GCTGAAGAACTTGGAGTTGGACGGGATGgtgagcttct ... ctcattgcagATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTA
EST: GCTGAAGAACTTGGAGTTGGACGGGATG ATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTAEST: gi|30251536|gb|CB969269.1|CB969269
genomic: GCTGAAGAACTTGGAGTTGGACGGGATGgtgagcttct ... ctcattgcagATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTA
EST: GCTGAAGGACTTGGAGTTGGACGGGATG ATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTAEST: gi|349822500|gb|FQ412764.1|FQ412764
genomic: GCTGAAGAACTTGGAGTTGGACGGGATGgtgagcttct ... ctcattgcagATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTA
EST: GCTGAAGAACTTGGAGTTGGACGGGATG ATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTAEST: gi|30303048|gb|CB979842.1|CB979842
genomic: GCTGAAGAACTTGGAGTTGGACGGGATGgtgagcttct ... ctcattgcagATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTA
EST: GCTGAAGAACTTGGAGTTGGACGGGATG ATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTAEST: gi|32247601|gb|CD713420.1|CD713420
genomic: GCTGAAGAACTTGGAGTTGGACGGGATGgtgagcttct ... ctcattgcagATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTA
EST: GCTGAAGAACTTGGAGTTGGACGGGATG ATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTA
genomic: GCTGAAGAACTTGGAGTTGGACGGGATGgtgagcttct ... ctcattgcagATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTA
ctgtgcattgaatttgattgaacatattttttttctccctttctgctcattgcagATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACA
atttgat putative branch site (score: 5)
catattttttttctcc putative PPT
attgaatttgattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcttcttttaatatatttacaaatattcttttcctgtgcattgaatttgattgaacatattttttttctccctttctgctcattgcagATGGAAGATCTGATTTTGGTCAAGGCCGGCCCAAGGGTGGAAGCTTACCTACGAATGGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG