Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aataaaaatgattacctgacttctctattgctcaaaactgttggtatgggattcctgaaagagggttagttgattcactaacttgggaactctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAATGGTTAGTATGAATGAGATGGCTGAAATTGTCCTAAGCTTTGAGAATAAG

Basic information

species Vitis vinifera
transcript Vv05s0020g04510.t01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04510.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: LOC_Os11g37890.3 (Oryza sativa), 3'ss of exon 4
-aataaaaatgattacctgacttctctat-tgctcaaaactgttggtatgggattcctgaaagagggttagttgattcactaacttgggaactctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAATGGTTAGTATGAATGAGATGGCTGAAATTGTCCTAAGCTTTGAGAATAAG
 |  | |    |  |  |||  |    |      | ||  |||    ||    ||  ||   |  |||      | ||| ||  |||  || |  ||| ||| ||||||||||| || ||||| ||||| || || |||||||||||||||||||| || ||||||||||||||||| || ||||| ||||||||||| |||
catcacagcataccatgtgatctaaagagacataccaatttgtctacatttt-tttttgggggccggtcgaccaagtcattacattgccaaatgcatt-cagGTTGACAAAGTCCGATTTCCGTGAGCCTGTAAACATTGGAAGTGATGAAATGGTCAGCATGAATGAGATGGCTGAGATAGTCCTCAGCTTTGAGAACAAG

upper sequence: Vv05s0020g04510.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: GRMZM2G138907_T01 (Zea mays), 3'ss of exon 5
----aataaaaatgattacctgacttctctattgctcaaaactgttggtatgggattcctgaaagagggttagttgattcactaacttgggaactctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAATGGTTAGTATGAATGAGATGGCTGAAATTGTCCTAAGCTTTGAGAATAAG
     ||   | |  | |       ||  | | |  || ||   |    |||  || | |  | |   || |  | |     ||  |||  ||    ||  ||| || |||||||| || ||||| ||||| || || |||||||| || |||||||| || ||||| |||||||| ||||| ||||| ||||||||||| |||
ggcttatctgagttctgaataatactcgttttggtacagaaagttccaaatgaaatccttttatg---gtgaactaagctgttattttgtcaaacacatc-cagGTTAACAAAGTCCGATTTCCGTGAGCCTGTAAACATTGGAAGCGACGAAATGGTGAGCATGAACGAGATGGCGGAAATGGTCCTGAGCTTTGAGAACAAG

upper sequence: Vv05s0020g04510.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ12864 (Selaginella moellendorffii), 3'ss of exon 4
aataaaaatgattacctgacttctctattgctcaaaactgttggtatgggattcctgaaagagggttagttgattcactaacttgggaactctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAATGGTTAGTATGAATGAGATGGCTGAAATTGTCCTAAGCTTTGAGAATAAG
                || ||  | |  ||||        ||| |    |||   |   | | |  |  |   ||  ||  ||||     ||     |||  |||||||||| ||||| || || ||  | ||||| ||||||||||| ||||| || ||||| ||||||||||| ||| || |  | ||||   | |||
-------------gtgtgtctctttttctgctttctggaattgatggtcgatcgatactaaatgccttttgctttttctttcttg-----tcgtgcacagGCTGACAAAGTCGGACTTTCGTGAACCGCTCAATATCGGAAGTGATGAGATGGTGAGCATGAACGAGATGGCTGAGATTATCTTGGGTTTTGGAGACAAG

upper sequence: Vv05s0020g04510.t01 (Vitis vinifera), 3'ss of exon 5
lower sequence: EFJ09286 (Selaginella moellendorffii), 3'ss of exon 4
aataaaaatgattacctgacttctctattgctcaaaactgttggtatgggattcctgaaagagggttagttgattcactaacttgggaactctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAATGGTTAGTATGAATGAGATGGCTGAAATTGTCCTAAGCTTTGAGAATAAG
         |  |  ||   || |||  |      || || ||||       | || || |    ||  ||   |  ||  ||||     ||     |||  |||||||||| ||||| || || ||  | ||||| ||||||||||| ||||| || ||||| ||||||||||| ||| || |  | ||||   | |||
---------gtgtgtctc-tttttctgctttctggaattgatggtcgatcgattctaaatgtcttttgctt---tttctttcttg-----tcgtgcacagGCTGACAAAGTCGGACTTTCGTGAACCGCTCAATATCGGAAGTGATGAGATGGTGAGCATGAACGAGATGGCTGAGATTATCTTGGGTTTTGGAGACAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77584261|gb|DV221202.1|DV221202
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|77587966|gb|DV223186.1|DV223186
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110697772|gb|EE075142.1|EE075142
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|71870290|gb|DT019345.1|DT019345
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|71868033|gb|DT017088.1|DT017088
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|71882666|gb|DT031721.1|DT031721
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110362661|gb|EC926208.1|EC926208
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110429041|gb|EC995528.1|EC995528
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110728895|gb|EE104863.1|EE104863
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110414119|gb|EC979945.1|EC979945
EST:     GTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: GTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|30296895|gb|CB973689.1|CB973689
EST:     CAAACTCGGTCTTTCGCCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110366045|gb|EC929684.1|EC929684
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|87585066|gb|DY473974.1|DY473974
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|77587013|gb|DV222647.1|DV222647
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|33409706|gb|CF215333.1|CF215333
EST:     CAAACTCGGTCTTTCGCCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|30299290|gb|CB976084.1|CB976084
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110688752|gb|EE067664.1|EE067664
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|77588003|gb|DV223206.1|DV223206
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110699656|gb|EE076844.1|EE076844
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAAAAGGTGCCCTGAG                         ATTGACAAGG-CAGACTTTCGGG-GACCAGTGA
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAG-CCAGTGA
EST: gi|77586407|gb|DV222325.1|DV222325
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110386087|gb|EC950660.1|EC950660
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|27585159|gb|CB007854.1|CB007854
EST:     TTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: TTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|349826666|gb|FQ418757.1|FQ418757
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAAGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCCGGAGC
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGC
EST: gi|34363353|gb|CF404938.1|CF404938
EST:     GTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCC-GGAGGCCAGTGAATATTGGAAGTGATGAAA
genomic: GTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGA-GCCAGTGAATATTGGAAGTGATGAAA
EST: gi|110711140|gb|EE087341.1|EE087341
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|33407870|gb|CF213497.1|CF213497
EST:     CAAACTCGGTCTTTCGCCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110375283|gb|EC940257.1|EC940257
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110694519|gb|EE071694.1|EE071694
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110361148|gb|EC924601.1|EC924601
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110702570|gb|EE081430.1|EE081430
EST:     TGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: TGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110415657|gb|EC981582.1|EC981582
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|30251810|gb|CB969543.1|CB969543
EST:     TTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: TTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110361734|gb|EC925229.1|EC925229
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|87583994|gb|DY473325.1|DY473325
EST:     TGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: TGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110703002|gb|EE079467.1|EE079467
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAAGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|71867732|gb|DT016787.1|DT016787
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110389225|gb|EC954045.1|EC954045
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|30252141|gb|CB968780.1|CB968780
EST:     GAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: GAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|71890126|gb|DT039181.1|DT039181
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|22013933|gb|BQ798967.1|BQ798967
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|87586940|gb|DY475007.1|DY475007
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110359380|gb|EC920776.1|EC920776
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|30253386|gb|CB970937.1|CB970937
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|351030340|gb|FQ432278.1|FQ432278
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCCGGAGCCAGTGAA
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAA
EST: gi|110429380|gb|EC995871.1|EC995871
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110357542|gb|EC921162.1|EC921162
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110690995|gb|EE068593.1|EE068593
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110728804|gb|EE104695.1|EE104695
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
EST: gi|110700605|gb|EE077416.1|EE077416
EST:     CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAG                         ATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT
genomic: CAAACTCGGTCTTTCACCTTCATTGATGAATGTGTAGAAGGTGTCCTGAGgtaaccttga ... tctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgggattcctgaaagagggttagttgattcactaacttgggaactctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAATGGTTAGTATGAATGAGATGGCTGAAATTGTCCTAAGCTTTGAGAATAAG
                              cactaac  putative branch site (score: 1)
                                            ctctatttc  putative PPT
                                             tctattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aataaaaatgattacctgacttctctattgctcaaaactgttggtatgggattcctgaaagagggttagttgattcactaacttgggaactctatttcagATTGACAAAGTCAGACTTCCGGGAGCCAGTGAATATTGGAAGTGATGAAATGGTTAGTATGAATGAGATGGCTGAAATTGTCCTAAGCTTTGAGAATAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
aataaaa
- - - - - - - - - - - - ctattgc
- - - - - - - - - - - - - - - - caaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactaac